Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2749 93.3 4e-14 seq6558 89.7 5e-13 seq1992 84.2 2e-11 >seq2749 Length=6745 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | |||||| || || |||||||| | ||| |||||| || ||| | | Sbjct 5255 CGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCA 5196 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| | || || | || || || || || || |||||||||||| Sbjct 5195 TCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTG 5136 Query 94913 TCATAAATTTTTGCCTTGACG 94933 || | |||||| |||||||| Sbjct 5135 TCCTGGATTTTTCCCTTGACG 5115 >seq6558 Length=25225 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| |||||| || |||| || || | ||| || || || || || ||||| ||| Sbjct 2681 TCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTG 2622 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| ||||||| | | ||||| | | | |||||||| | || || Sbjct 2621 TCCTGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATC 2562 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || | ||||||||||| ||||||||| || Sbjct 2561 GTCTTCCCCGTCAACGTTTTCACAAATATCTGCATGGTT 2523 >seq1992 Length=1353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 165/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | | || | |||||||||||| || | || || || | Sbjct 843 AAAATTTGCATTCCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATA 902 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| || ||| | || |||| |||||| || |||| || || | || Sbjct 903 TTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGT 962 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| ||||| || ||||| ||||| | ||| ||| ||| || | | ||||| Sbjct 963 TGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCC 1022 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | | ||||| || | || ||||| || || ||||| || || || || || |||||| Sbjct 1023 GAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATG 1082 Query 95009 CTTA 95012 ||| Sbjct 1083 GTTA 1086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251481399680