Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3919 136 5e-27 >seq3919 Length=4506 Score = 136 bits (150), Expect = 5e-27 Identities = 584/912 (64%), Gaps = 22/912 (2%) Strand=Plus/Minus Query 33018 GTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCAT 33077 ||| ||||| || || || || |||||||| || ||||||| || ||||| ||||||| Sbjct 1389 GTACTCACCTACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCAT 1330 Query 33078 GAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCT 33137 |||||||||||||||| | || || || |||| || ||||| | | ||||| Sbjct 1329 CCAATCAAACGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCG 1270 Query 33138 ATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 33197 || ||| | | || || ||| ||||| ||||||| ||||| | || || Sbjct 1269 GTCTGCGCAGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCAC 1210 Query 33198 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCT 33257 || | || | | || ||| ||| ||| || || | || ||| Sbjct 1209 GGGCAATGCTTTGGACACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATATCGTG 1150 Query 33258 AACGGTTTCTTCACTCGGTGGATGCAATAAATGTT---TAAACATCAAACATGCGAAATC 33314 || | || || | || || | || || | | ||| ||| || |||||||| Sbjct 1149 AATGCGTTGTTGAGGGAGTTTATTTATCAAGTGGTCCTTGTACAGCAAGCACGCGAAATC 1090 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||||| |||||||| | || || || |||||||| || | |||||||| | Sbjct 1089 ACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAA 1030 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || ||||| || | ||| || | || | || || || ||||||||||| || || Sbjct 1029 ACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTCGCA 970 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT-----CATGTATCCACTTT 33489 || || || || | || || || || | || ||| | | | |||| | Sbjct 969 CGCGGCGAAAGCTACAACCCTTTCGGCAAA--CGACGCATTTTCGGCGTTGGTCCA---T 915 Query 33490 TGA--GC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTT-TCTATGGCATTAAAGAG 33545 || || |||||||||||| | || || | || ||| || |||||||| | | Sbjct 914 CGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGTTATCGATGGCATTCAGCAA 856 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 | ||||| || | || ||||| || || || || | |||| || | ||| | Sbjct 855 CCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACTTCTGC 796 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 || |||||||||||||| ||||| || |||||||| || || ||||| | | || || Sbjct 795 GTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGTTGGAC 736 Query 33666 TTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 ||| || | | | |||| | || || || || || || |||||| |||||| ||| Sbjct 735 TTC-GTTCGAGA-AGTTCATCAACAGGTTCTCGTTTACAATGCCGTCAGAGGCTGCGAAA 678 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783 || |||| || | | || || | ||||| || | ||||| ||| || || Sbjct 677 AAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAGTCTTTA 618 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 | |||| | | || | |||||| | ||||| || || || || || ||||| ||| Sbjct 617 CTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTTTGTAC 558 Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 33903 || | ||| || || | | ||||| ||||| | ||| |||| || || ||| | Sbjct 557 ATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAATCGTTTCGGGTTTTCCGTC 498 Query 33904 AGGATGGGTTCC 33915 || || |||||| Sbjct 497 AGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622892006878080