Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6148 120 3e-22 seq3919 89.7 5e-13 seq229 86.0 6e-12 >seq6148 Length=2258 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 ||||| |||||| | || ||||| || | || || ||| | || ||| |||| | ||| Sbjct 1350 AACAAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAA 1291 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 ||| ||||||||||| | ||||| |||||||| ||||| ||||| || || || Sbjct 1290 CCAAGTGACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCT 1231 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 ||||||||| | || || | || ||| |||||| | ||||||| | | | | || ||| Sbjct 1230 GATCAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGAC 1171 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || ||||| ||||| ||| | || | || |||| || | ||| | || ||| Sbjct 1170 TACAACATCCAAAAGGAAGCCACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGA 1117 >seq3919 Length=4506 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 |||||| || || || || ||||||||||| ||||| || | || ||||| | | ||| Sbjct 1389 GTACTCACCTACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCAT 1330 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 | || || ||||| | | |||| | ||| || ||||| | | ||||| ||| Sbjct 1329 CCAATCAAACGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCG 1270 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGAC 119824 ||||| ||||||||||||||||||| | |||||||| || | || | || Sbjct 1269 GTCTGCGCAGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCAC 1210 Query 119825 CGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGC 119866 || || || |||| | |||| | ||||| ||||| || || Sbjct 1209 GGGCAATGCTTTGGACACGAAAACTTTTTCGATGTCCACAGC 1168 >seq229 Length=1895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 || ||| | || ||||| || | || || || |||| || | || | || | | | Sbjct 682 ATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAGC 741 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||| | | ||||| | ||||||| ||||||||||| | | | ||| || Sbjct 742 GACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAAA 801 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||| || || || ||||| | ||||| | |||||||| ||| Sbjct 802 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTACAAC 861 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| |||||| | || | |||||| | || | ||| | ||||| Sbjct 862 GTTCAGAAAGAAGCCACGCTGCATCTGCTACTCCGCCTTCGGGGAGG 908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478619990511360