Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6148 113 4e-20 seq229 98.7 9e-16 seq2749 96.9 3e-15 seq1992 82.4 7e-11 >seq6148 Length=2258 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||| |||||| | || ||||| || | || || ||| | |||||| |||| || || Sbjct 1350 AACAAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAA 1291 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | | ||||||||||| | ||||| |||||||| ||||| ||||| || || || Sbjct 1290 CCAAGTGACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCT 1231 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 |||||||| | || || | || ||| || ||| | ||||||| | | | | | || || Sbjct 1230 GATCAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGAC 1171 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| ||| | || |||| || || Sbjct 1170 TACAACATCCAAAAGGAAGCCACCCTTCACTTGGT 1136 >seq229 Length=1895 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 || ||| | || ||||| || | || || || ||||||| | || || ||| | | | Sbjct 682 ATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAGC 741 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||| | | ||||| | ||||||| ||||||||||| | | | ||| || Sbjct 742 GACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAAA 801 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| || ||||| | ||||| | ||||| || ||| Sbjct 802 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTACAAC 861 Query 24171 ATTCAAAAAGAA 24182 |||| |||||| Sbjct 862 GTTCAGAAAGAA 873 >seq2749 Length=6745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || || ||||| || || || ||||||| | | || ||| | | |||||| ||| Sbjct 5050 TTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGATC 5109 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 | | ||||| ||| || ||||||||||| || || || || |||||| ||||| Sbjct 5110 ATGAACGTCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGACTG 5169 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 |||| || ||||||||| || ||||||| | | | | |||||| ||||| ||||| Sbjct 5170 ATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAAAAG 5229 Query 24180 GAATCTAC 24187 || || || Sbjct 5230 GATTCCAC 5237 >seq1992 Length=1353 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || ||| | || |||||| || Sbjct 1081 ATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCCTCG 1022 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || ||||||||| ||||| |||||||| |||||||||||| Sbjct 1021 GACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAA 962 Query 24111 CAGAGACTGATTT 24123 ||| | |||||| Sbjct 961 CAGCGGTTGATTT 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429898859978640