Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3675 197 1e-45 seq6148 122 8e-23 seq2749 96.9 3e-15 seq229 95.1 1e-14 seq6558 93.3 4e-14 seq1888 82.4 7e-11 >seq3675 Length=4586 Score = 197 bits (218), Expect = 1e-45 Identities = 612/930 (66%), Gaps = 39/930 (4%) Strand=Plus/Minus Query 145627 GATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGC 145686 ||| |||||||| || ||||| || |||| || | | | |||| || | |||||| | Sbjct 1557 GATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGT 1498 Query 145687 GCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGC 145746 |||||| || || |||| || ||||||| |||||||| || ||||| | |||||| | Sbjct 1497 GCACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGA 1438 Query 145747 GTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGA--TAAAACGG 145804 |||||||||||||||||||||| || || || || || | || | || | ||| Sbjct 1437 GTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTTGAAC-- 1380 Query 145805 TGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGC---GGCCCTCTTCTTCGTATTTCCTG 145861 ||| ||||| || || | || | || | | | ||||||| | ||||| || | Sbjct 1379 CACAATTCCTGGGCGCGGA--TGGT-CTTGAACCCTTTGCCCTCTGCCTCGTACTTGGCG 1323 Query 145862 TAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGG--CCGGGACACTTGTTGGGAC 145919 || | || ||| | || || ||| |||| |||| ||| |||||||| Sbjct 1322 TACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCCAC--GTTGGGAC 1265 Query 145920 ACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACA 145979 | | || | ||| |||| || | ||||||| ||| || | ||||| | ||||| Sbjct 1264 AGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCACA 1205 Query 145980 GCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TA 146038 |||||| | || |||||| || | | ||| |||| |||| |||||||| | Sbjct 1204 TCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATCCA 1145 Query 146039 AGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGT 146098 || || | | | | ||||||||||||||| |||| || | ||||| | || || || Sbjct 1144 AGAACTC-AAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCGC 1086 Query 146099 TTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCG 146155 ||| || || ||||| |||| ||| | ||| ||| |||||||||| |||||| | Sbjct 1085 TTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATG 1026 Query 146156 ACGCCGCTGGCTACGCCGTTCGT----AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCA 146211 | |||| || ||||| || || | || | |||| ||||||| | || Sbjct 1025 ATGCCGTTGCTGGAACCGTTGGTGCCCCGAATGTA----GCTGCCTTGGGAGCGAATGCC 970 Query 146212 ATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCG 146270 || | | |||| || ||| |||||||| || |||||| | | | || | Sbjct 969 GTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGCAGGACTTCAAG-G 911 Query 146271 TCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACAT 146328 | |||||||| || || ||||| ||| |||| ||| |||| ||||||||| | Sbjct 910 TGTCGTAGATCCCTTCGATGCTGTCGTCCTTC--ATGGTCAGCAAGAAGCACGAGGCGAG 853 Query 146329 CTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAA---ACATTTT 146385 ||||| || ||||| || ||| | ||||| | ||||| || | |||| || Sbjct 852 CTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGAAGTACATGTT 793 Query 146386 TCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAA 146445 |||||||| || || ||||| || | ||||| | || || || | Sbjct 792 ---GCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGGATACCGAT 736 Query 146446 AGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAA 146505 | ||||||||||||||||| || || ||||| | | || || ||||| || | Sbjct 735 GGAAACGCGCATGAGCATGTGCTGCGGGCGCTCGACGATCTGGCCGTTGATCTTCAAAAG 676 Query 146506 ATAGCCGTTCTCCAGGGTTTTGTATCCGAA 146535 ||| | |||||| ||||||| | ||||| Sbjct 675 GTAGGCCCTCTCCAAGGTTTTGAACCCGAA 646 >seq6148 Length=2258 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| | |||||||| |||||||| || ||| Sbjct 1118 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTC 1177 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | || || || ||| |||| | ||| || || || || ||| Sbjct 1178 AAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGG 1237 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | || || | | || | Sbjct 1238 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACA 1297 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||||||||| || ||||| ||||||||||| ||||| Sbjct 1298 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq2749 Length=6745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| |||| || | ||| || |||||||| |||||||||||| | Sbjct 5267 CCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGAC 5208 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||||||||| ||| | || | ||||| ||||| || ||| Sbjct 5207 AAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGG 5148 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | | | || ||| | | ||| | | Sbjct 5147 ATACCTTCTTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACG 5088 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225 | | |||| || |||||||| | || || ||||| Sbjct 5087 TACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAA 5050 >seq229 Length=1895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 || || |||| |||||| ||||||| | | ||| ||| || |||||||| || ||| || Sbjct 872 TCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAG 813 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | ||||| | ||| | || | ||||||||||| || || |||||| | | Sbjct 812 ATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTTC 753 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 | | || ||| | | ||| | ||| | |||| || |||||||| || || |||||| Sbjct 752 ACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACG 693 Query 131224 AAAATCTGCATG 131235 ||||| || ||| Sbjct 692 AAAATTTGTATG 681 >seq6558 Length=25225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| | |||||| ||||||||||| ||| | || || |||||| | ||| || || Sbjct 2724 GGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCC 2665 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || | || || || || ||||| || ||||| ||||| ||||| || || ||||| Sbjct 2664 CGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTT 2605 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || | || ||||| ||| | ||||| || || || || | || Sbjct 2604 GACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGT 2545 Query 131217 TTTTACGAAAATCTGCATG 131235 ||| || || ||||||||| Sbjct 2544 TTTCACAAATATCTGCATG 2526 >seq1888 Length=501 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT 131161 |||| | |||||| || || || ||||| ||||| ||||| ||| || ||||||| | Sbjct 3 AGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGT 62 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 ||| | ||||| | | ||| | |||| || | ||||||||| || | ||||||| Sbjct 63 TCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTTA 122 Query 131222 CGAAAATCTGCAT 131234 ||||||| ||||| Sbjct 123 CGAAAATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471970979665920