Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6558 111 1e-19 seq6148 82.4 6e-11 >seq6558 Length=25225 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || |||| |||||| || ||||||||||||| Sbjct 2755 ACCCCCCCCGGAGGCGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGG 2696 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | ||| | |||||||||| ||||| |||||| |||| | ||| |||||||| | Sbjct 2695 AGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGG 2636 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || || ||||| ||| | ||||| || | | | ||||| |||||| Sbjct 2635 GGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGA 2576 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || || |||| |||||| ||||| |||||||| Sbjct 2575 CGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq6148 Length=2258 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 16704 TTTACC--CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTA 16761 |||||| | || || || | || |||| || || |||| |||||||| |||||||| Sbjct 1111 TTTACCTCCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTA 1170 Query 16762 GTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 ||| || ||| | | || ||||||||||| || || | ||||| || ||||| || Sbjct 1171 GTCACTCAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATC 1230 Query 16822 CACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 || | || || ||||| || | ||||| || | | | ||||| | || Sbjct 1231 AGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGG 1290 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 ||| || | ||| |||||||| || || || || || || ||||| ||||| |||| Sbjct 1291 TTCCACATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTTGT 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405053006473120