Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6148 122 6e-23 seq6558 118 7e-22 seq1992 102 5e-17 seq2749 93.3 3e-14 seq1888 87.8 1e-12 >seq6148 Length=2258 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| ||||| ||| |||||||| || ||||| ||| | Sbjct 1118 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTC 1177 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || |||||||||||||| || || || ||||||||||| | |||| Sbjct 1178 AAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGG 1237 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || |||||||| || || | || || || | ||| || Sbjct 1238 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACA 1297 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| ||||||||||| | || || ||||| || ||||| || Sbjct 1298 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq6558 Length=25225 Score = 118 bits (130), Expect = 7e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| ||||| ||||| || || | || |||| || || ||| Sbjct 2729 TGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGT 2670 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || | |||||||| |||| ||||| ||||| |||||| ||| ||| Sbjct 2669 TTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTT 2610 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| || |||| | || || || || || || ||||| || || |||||| Sbjct 2609 TGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTC 2550 Query 38295 AAGGTTTTCACGAATATCTGCATGTTTT 38322 || |||||||| |||||||||||| ||| Sbjct 2549 AACGTTTTCACAAATATCTGCATGGTTT 2522 >seq1992 Length=1353 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || | ||| ||| || || ||||||||||| |||| || |||| || Sbjct 872 CACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTC 931 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || ||||| || ||||| || | || |||||||||| |||| |||||| ||||| Sbjct 932 CAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTG 991 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| |||||||||||||||| | || || || || || || || || || || Sbjct 992 AATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTT 1051 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | ||| || ||||| || |||||| || Sbjct 1052 CCCGGTAAGGGTCTTGACGAAAATTTGCATGGTT 1085 >seq2749 Length=6745 Score = 93.3 bits (102), Expect = 3e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 |||||||| || |||||||| |||||| ||| | || || | || || ||||| || Sbjct 5231 TCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAA 5172 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || ||||| || | |||| |||||||||||| |||||| ||| || ||| Sbjct 5171 ATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCCTGGATTTTTCCCTTGACGTTC 5112 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 || || || | | || || | || ||||| || ||||| ||||| || || ||| Sbjct 5111 ATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCGTCTTACCGGTCAATGTCTTGACG 5052 Query 38307 AATA 38310 |||| Sbjct 5051 AATA 5048 >seq1888 Length=501 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 38184 AATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACA 38243 || || || || |||||||| | ||||| ||||| |||||| || |||||||| || Sbjct 2 AAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACG 61 Query 38244 TTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTT 38300 |||| || ||||| |||| || || || | || || |||||||||||||| ||| Sbjct 62 TTCTCGATGGTATC---ACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTT 118 Query 38301 TTCACGAATATCTGCATGTT 38320 || ||||| || ||||| || Sbjct 119 TTTACGAAAATTTGCATATT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334918265586128