Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3919 118 1e-21 >seq3919 Length=4506 Score = 118 bits (130), Expect = 1e-21 Identities = 411/631 (65%), Gaps = 19/631 (3%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||| ||||| | |||||||| | || || | |||||||| | Sbjct 1108 ACAGCAAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 1049 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | | |||||||| | || ||||| || | ||| || | || ||| || || | Sbjct 1048 AGCACAAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGG 989 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 32832 ||||||| || || || || || || || | || || || || | || ||| | Sbjct 988 AAAAGAAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAA--CGACGCATT 931 Query 32833 -----CATGTATCCACTTTTGA--GC-CCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 | | |||| | || || |||||||||||| | || || | || ||| Sbjct 930 TTCGGCGTTGGTCCA---TCGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGT 875 Query 32885 C-TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 32943 || || ||||| | | | ||||| || | || ||||| || || ||||| | Sbjct 874 TATCGATGGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAA 815 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 |||| || | ||| | || |||||||||||||| || || || ||||||||||| | Sbjct 814 GAAGAGAGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACC 755 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA--TTTTCATTCACTAT 33061 | ||||| | | || ||||| || | | | |||| | | | || || || || || Sbjct 754 TTGCCTCCGGCAGTTGGACTTC-GTTCGAGA-AGTTCATCAACAGGTTCTCGTTTACAAT 697 Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33121 |||||| |||||| ||||| |||| || | | || || | ||||| || Sbjct 696 GCCGTCAGAGGCTGCGAAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGT 637 Query 33122 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 | ||||| ||| || || | |||| | | |||| |||||| | ||||| || || Sbjct 636 CATTTTATCCCAGTCTTTACTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGA 577 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || || ||||| ||||| | ||| || || | | || || || || | ||| || Sbjct 576 GGCTTCAGCTTTTTTGTACATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAA 517 Query 33242 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 33272 || || || |||| | || ||||||||| Sbjct 516 TCGTTTCGGGTTTTCCGTCAGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633575860204800