Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1992 129 5e-25 seq2749 113 4e-20 seq229 98.7 9e-16 >seq1992 Length=1353 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| | ||||| || |||| || | || || ||| | Sbjct 1085 AACCATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCC 1026 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || ||| |||||||||| || ||||| ||||| || || || || Sbjct 1025 CTCGGACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGA 966 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | |||||||| || ||||| || ||||| | ||||| || ||||| Sbjct 965 TCAACAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTA 906 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||| ||||| | || || ||||| Sbjct 905 CAATATACAGAAAGAGGCCACGTTGCACTTGGTGCT 870 >seq2749 Length=6745 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065 |||| || ||||| ||||||||||| | || || | | |||||| | ||||| | Sbjct 5048 TATTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGA 5107 Query 25066 TCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || | | ||| ||||||| ||||||||||| || || |||||||||||||| Sbjct 5108 TCATGAACGTCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGAC 5167 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | ||||| |||||||| || | ||||||| || ||| || ||||||||| || |||| Sbjct 5168 TGATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAAA 5227 Query 25186 AAGAATCCAC 25195 | || ||||| Sbjct 5228 AGGATTCCAC 5237 >seq229 Length=1895 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 || ||||| || |||||||| |||||||||| | || || | || |||||| || Sbjct 682 ATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAGC 741 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||| | | |||| ||| || ||||||||||| | | || ||| || Sbjct 742 GACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAAA 801 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || ||||| || || | ||||| | || | || |||| ||||| Sbjct 802 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTACAAC 861 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 |||| |||||| ||||||| ||| Sbjct 862 GTTCAGAAAGAAGCCACGCTGCAT 885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433290566960720