Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6148 150 2e-31 seq6558 123 2e-23 seq2749 107 2e-18 seq1992 107 2e-18 seq1888 104 2e-17 seq498 96.9 3e-15 >seq6148 Length=2258 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||| || || ||| | || |||||||| | || || || |||||| | Sbjct 1347 AAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCA 1288 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | |||| ||||| || || |||||||| ||||| || || ||| Sbjct 1287 AGTGACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGAT 1228 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||||||||| || ||||| ||||| || || ||| ||||||| | || ||| Sbjct 1227 CAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTAC 1168 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| ||||| ||| ||||| | || || ||| Sbjct 1167 AACATCCAAAAGGAAGCCACCCTTCACTTGGTT 1135 >seq6558 Length=25225 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || || ||| | || | || || || || | Sbjct 2527 ATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCTCG 2586 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| ||||| |||||||| || || || ||||| ||| Sbjct 2587 GACACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACCAA 2646 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || |||||||| ||||| ||| || ||||||| |||||| Sbjct 2647 CAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTCTCCGACTACAAC 2706 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || ||||| Sbjct 2707 ATTCAGAAGGAGGCCACC 2724 >seq2749 Length=6745 Score = 107 bits (118), Expect = 2e-18 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATAC---C 22284 || || || || || |||||||| ||| | ||| | | ||||| | | ||| || | Sbjct 5050 TTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGATC 5109 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 || ||| |||| |||||| || ||||| || ||||| || || || ||||| || Sbjct 5110 ATGAACG---TCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGA 5166 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || || |||||||| ||| | || ||| ||| || | |||||||||||||| ||| Sbjct 5167 CTGATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAA 5226 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||| | || |||| ||||| Sbjct 5227 AAGGATTCCACCTTGCACCTAGTCTTGCG 5255 >seq1992 Length=1353 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || || | || | || || || || | Sbjct 1081 ATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCCTCG 1022 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| |||||||||||||| || || || ||||||||| Sbjct 1021 GACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAA 962 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || |||||||| || || |||||| | || |||||||| Sbjct 961 CAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTACAAT 902 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| |||| Sbjct 901 ATACAGAAAGAGGCCAC 885 >seq1888 Length=501 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || ||||| || || |||||||| |||| || || ||||| | Sbjct 138 AATATGCAAATTTTCGTAAAAACGTTGACGGGTAAAACCATCACGCTCGATGTGGAGCCA 79 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || | |||| ||||| || || |||||||| ||||| || || ||| Sbjct 78 AGTGATACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGAT 19 Query 22336 CAACAACGTCTTATATT 22352 ||||| |||||||| || Sbjct 18 CAACAGCGTCTTATCTT 2 >seq498 Length=572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGC-TT 130072 ||||||||||||||| ||||| || || | |||||||||||| || | || | || Sbjct 26 TTCGACTCGTTTCATGAACAAGTCAGGCATCCACAGGGCGTAGAATAGGTCCCTTGCACG 85 Query 130073 TTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132 |||| || ||| |||| ||| |||| | || || | || | || || ||||| Sbjct 86 TTCT-TCTTCGACACCATGGTTCAGTTTTAATTTTAGTACGTCCTGAACATCTTTGTGCC 144 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT---TTGCCCCCTTGGTCAACGTGGC 130189 | ||||||| |||| || | | |||||||||| ||||| || || ||||| | || Sbjct 145 ATGGTTCAATGTAAACGGCGAAGGAGCCCTTCCGTTTGTTGCCTCCCTGATCAACATAGC 204 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGT 130247 | ||| || ||| | || |||||||| | |||| |||||| || ||||| || Sbjct 205 GTGCGGTGTTATTGAATACACGCAACATAGGGACCAAACCGTTGCTTGTACCGTTCGT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419691741796720