Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1992 174 3e-38 seq6148 156 8e-33 seq2674 156 8e-33 seq6558 152 9e-32 seq2749 145 1e-29 seq4042 104 4e-17 seq3919 89.7 9e-13 seq1888 86.0 1e-11 seq4697 84.2 4e-11 >seq1992 Length=1353 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||||||||| | |||||||| | ||||| |||||| || || || ||||| | Sbjct 853 TTCCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCG 912 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || ||||| ||||| ||||| || || || | | ||||| ||||| | Sbjct 913 ACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAG 972 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||||||||||||||||||| ||| || ||| || ||||| | | || | Sbjct 973 GGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGA 1032 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| ||||| || || || |||||||||||||| || ||||| Sbjct 1033 CATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq6148 Length=2258 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||||||| || |||| || ||||||||||| || || Sbjct 1117 TCCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACT 1176 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| || || || |||||||| || || | |||||| || || || Sbjct 1177 CAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGG 1236 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || ||||||||||| || |||||| ||||||| ||||||||||| || ||| || Sbjct 1237 GATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCAC 1296 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTAT 68469 || | ||| |||||||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 1297 ATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTTGTTAT 1352 >seq2674 Length=7205 Score = 156 bits (172), Expect = 8e-33 Identities = 206/281 (73%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 176241 GTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGT 176300 || || || |||| ||| |||| ||| || || || ||||| |||| |||||||| Sbjct 1461 GTAAATATGTACCGAGCGCTGGCACCGTCTTTCCCCCCTTGAAGCCGGGTTCCGAATTGG 1520 Query 176301 CCG--CGAGGA-AGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCG 176357 ||| || | | || ||| | ||||| |||||||| |||||||| || ||||| ||| Sbjct 1521 CCGGACGGGTACAGCAGCGGA---ATGTTGTTCGAACCGACGTAGTCCTGCGCCATCCCG 1577 Query 176358 ACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTAT 176417 |||| || ||| || || ||||| |||||||| || | |||| |||||| ||| Sbjct 1578 GTGATGGTGCTCTGTAGGGATGCCTCTCCGTGGTGGTATGCCGCGTGCTCACTCACGTAC 1637 Query 176418 CCGGCAAACTGCGCGACTTTGATTTCTTGTACG--AGGTTGCGCTTCAACGCCGAGAACA 176475 ||||| | |||||| || ||||| || | || |||||||||||||| || ||| | Sbjct 1638 CCGGCGAGCTGCGCAACCTTGATCTC--GCTCGTTAGGTTGCGCTTCAAGCACGCGAAAA 1695 Query 176476 GAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGAC 176516 | | || |||||||| |||||||| ||||||| | ||||| Sbjct 1696 GCACTTTTCGCTGCGACGGCTTCAGCCCATCGATGGCCGAC 1736 >seq6558 Length=25225 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||| ||| || || ||||| || |||||| Sbjct 2753 CCCCCCCGGAGGCGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAG 2694 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || ||||| ||||| || || || | | |||||||||||| || Sbjct 2693 AGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGG 2634 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||||||| ||||||| ||| |||||||| | | || || Sbjct 2633 ATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACG 2574 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || ||||| | || || || ||||||||||| Sbjct 2573 TCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq2749 Length=6745 Score = 145 bits (160), Expect = 1e-29 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || |||||||| || | ||| | ||||| || ||||||||||| |||||||| Sbjct 5268 TCCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGA 5209 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| | |||||| |||||||| || |||| |||||||| || || Sbjct 5208 CAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGG 5149 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 || ||||| ||||| || || ||| |||||||| | ||| ||||| ||| | || | Sbjct 5148 GATACCTTCTTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTC-GCTAGGCTCCA 5090 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 | | ||| || || || || || || | ||||||||||||| Sbjct 5089 CGTACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAATA 5048 >seq4042 Length=4160 Score = 104 bits (114), Expect = 4e-17 Identities = 132/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 68264 CGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| |||||| |||||||| || ||| | || | || ||||| | ||||||||| Sbjct 2594 CGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACCGTCTTCCAGCTGCTTCCC 2535 Query 68324 GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 ||| || || || | ||||| || || ||||||||||||||||| || ||| || ||| Sbjct 2534 GGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTT 2475 Query 68384 GACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| |||||| ||||| ||| | ||| || || | ||| || | ||||||| || Sbjct 2474 CACGTTCTCGATCGTGTC-GCTCGGTTCGACGTCAAGGGTAAT-CCTCTTCCCGTAAG 2419 >seq3919 Length=4506 Score = 89.7 bits (98), Expect = 9e-13 Identities = 95/122 (78%), Gaps = 5/122 (4%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| | |||||||||||||||||||| ||||||||| || | || |||||||| | || Sbjct 1086 GTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACC 1027 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTC-CAC 10369 ||| || | |||||| | ||| || ||||||||| ||| |||||| ||||| ||| Sbjct 1026 CCGCTTCTTTAACCAGAACACGGCACAAAACGACCCG--GAAAAGAAGATGCCCTCGCAC 969 Query 10370 GC 10371 || Sbjct 968 GC 967 >seq1888 Length=501 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68327 GAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||| || || | ||||| || || || || ||||||||||| || |||||| |||||| Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 68387 GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 | ||||||||| || || || || || | ||||||||||| ||||| | || || Sbjct 61 GTTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTT 120 Query 68447 GACGAATATCTGCAT 68461 ||||| || ||||| Sbjct 121 TACGAAAATTTGCAT 135 >seq4697 Length=791 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTA-GTCTTGGGCCATTCCGACTATGGCGCCCT 176370 ||||| || |||||||| || ||||| |||| ||||||| || || || | || | Sbjct 411 AAGCATGTTCATGTTATTGCTTCCAACGTACGTCT-GGGCCATGCCAACGATCGTCCCGT 469 Query 176371 GGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCG 176430 ||| || ||||||||||||||| |||||| || ||||| || || | ||| | Sbjct 470 TCAGACTGGCTTCGCCGTGGTGATAGGCGGCGTGTTCGGAGGTGTACCCTGCGAGCTGGG 529 Query 176431 CGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCG 176490 | || |||||| || || | ||| ||||||||||| | ||||| | || | ||| | Sbjct 530 CAACACGGATTTCGTGCACCAAGTTTCGCTTCAACGCAGCGAACAATACTTTTCTCTGGG 589 Query 176491 AGGGCTTCAGACCATCGACGACCGACGG 176518 || || | || || || || ||||| Sbjct 590 AGTTTTTGAAGCCGTCCACCACGGACGG 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921540744255360