Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6558 102 7e-17 seq229 102 7e-17 seq4042 98.7 8e-16 seq2749 95.1 1e-14 >seq6558 Length=25225 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||| | || || || || | ||||| || || | Sbjct 2717 TCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAA 2658 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | || |||||||| || || || ||||| ||||| ||||||||| || | | Sbjct 2657 ATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTC 2598 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | || |||||||||| ||| | ||| || || |||| ||||| ||| Sbjct 2597 TCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACA 2538 Query 114372 AAAATCTGCATGGCTT 114387 || |||||||||| || Sbjct 2537 AATATCTGCATGGTTT 2522 >seq229 Length=1895 Score = 102 bits (112), Expect = 7e-17 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| | |||||| |||| |||||| ||||||| | || ||||| || || Sbjct 885 ATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTG 826 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 ||||| ||| |||| || ||||||| ||| | | | ||||||||||| |||||| Sbjct 825 CTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTT 766 Query 114299 TTGTTTTAGCTGTTCA--ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 | | || | ||||| | |||||| | | || ||||||| || | ||| || ||| Sbjct 765 TCGCTT--GACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCG 708 Query 114357 GTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| || ||||| ||||| || ||| Sbjct 707 GTCAGGGTCTTTACGAAAATTTGTATG 681 >seq4042 Length=4160 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| | || | || | ||| | ||||| || |||||||| ||| Sbjct 2626 ATTCCACCACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCG 2567 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || || || || |||| ||||||||||| ||||| Sbjct 2566 CCCAAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGG 2507 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| |||| || | | || | |||||| | | |||| Sbjct 2506 GGAATGCCTTCCTTGTCCTGGATCATTTGCTTCACGTTCTCGATCGTGTCGCTCGGTTCG 2447 Query 114333 ACGTCCACGGTCACCGTTTTGCCG 114356 ||||| | ||| | | | || ||| Sbjct 2446 ACGTCAAGGGTAATCCTCTTCCCG 2423 >seq2749 Length=6745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | ||| |||| || | || || || ||||| |||||||||||| | Sbjct 5267 CCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGAC 5208 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| || || || || ||| | || || ||||||||||| || || Sbjct 5207 AAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGG 5148 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA--ACGGTGTCGGTGGATTCGA 114333 || ||||||||||| || ||| || | ||||| | |||||| | | || | Sbjct 5147 ATACCTTCTTTGTCCTGGATTTTTCCCTT--GACGTTCATGATCGTGTCGCTAGGCTCCA 5090 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 114373 ||| || || | ||| || ||||||| || || || || Sbjct 5089 CGTACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAA 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420098106689856