Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3675 269 5e-67 seq3919 141 2e-28 >seq3675 Length=4586 Score = 269 bits (298), Expect = 5e-67 Identities = 1010/1565 (65%), Gaps = 39/1565 (2%) Strand=Plus/Minus Query 243887 TGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGA--G 243944 || || ||||||| ||| | | || |||||||||||||| | || ||| || | Sbjct 2336 TGACTTTGGTCGATGAATGCACCACGGTCTGCGGCCATGGTAAGGATAGTCTTTTGGCTG 2277 Query 243945 ATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCT 244004 || || || ||| |||||||| | ||| |||| ||| | || | | ||| | Sbjct 2276 ATTTCCCAGACG--GTCTTGTACAGATCTTTGTACTGCTTGGGAAGGCCCTTAACGTTTT 2219 Query 244005 GCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA-G 244063 | || || || | | | |||| |||| |||||| | | | |||| | | ||| | Sbjct 2218 GAACAGATCCTCCATCGGCAATGATCTGGTTGCGCACGCTTGGGGTCCAGATGTTCAACG 2159 Query 244064 CGCTCCAGCGCCTCGACCAGGTGCCTGTTCAC-CACCTGAAACTCTCCCGACAGCACGCG 244122 || || || | | || || ||| |||| || ||| | ||||||||| | ||||| || Sbjct 2158 CGATCAAGTCACGCAACAAG-TGCTTGTTGACGCACGT-AAACTCTCCTGCAAGCACACG 2101 Query 244123 GCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGC 244182 | | ||| | |||| | || || |||| || || |||| |||| || || | Sbjct 2100 TCTGTTGTACATGTTGGTCGTGTATGGTTCGAAGCATTCGTTGTTTCCCATAATTTGTGA 2041 Query 244183 CGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT 244242 || || |||||||| |||| || |||| ||| | ||||||||| | || Sbjct 2040 GGTCGAGGCCGTCGGCATTGGCGCGACGAGCAACGAGTTGCGTACGCCGTGCTTGGCGAC 1981 Query 244243 GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCA 244302 | | || || ||||||||| | ||| || | |||| ||| Sbjct 1980 ATTGGCGCGAAGTTCCGCCCAGTCCCATCGGTCCGTTGGGG--TAACGTT-------CCA 1930 Query 244303 CATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC 244362 |||||| || | | || ||| ||| || | ||| ||||||| |||| | || Sbjct 1929 CATGTCCGGTTGGAAGATGCCTTTGGAGACTGGACAGCCTGGGTAGGTCTCGTAGTGTCC 1870 Query 244363 GTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 | ||| | |||| || || | || | |||||| |||| ||||| ||||| || Sbjct 1869 GAAGCGTTCGGCCTCCTCGCAAGACGCGGTCATCGCGGCGAAGTACATGGTTTCGAATAT 1810 Query 244423 CATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGAC 244482 | |||||||| | ||||||| ||| ||| || | || ||||| ||||| | Sbjct 1809 CTCCTTGTTCAATTGTCGGGCCTCTTCGCTTTCGAATGGAAAGCGCATCAAAATGAACGC 1750 Query 244483 GTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 |||||| || || || ||||| | || || || | ||| ||| | |||||| || Sbjct 1749 GTCGGCAAGCCCTTGGACGCCCAGCCCAATTGGGCGGTGGCGCATATTGGAGTAGCGAGC 1690 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 || ||| ||||| ||||| ||||||| || ||| | |||| ||| | | Sbjct 1689 CTCCTCCACTGGGTAGTAGTTGACGTCGATGACACGGTTCAAGTTGACGGTCACGGTTTT 1630 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 || || ||| ||| || || |||| | || | ||| || ||||| ||| Sbjct 1629 AACAACATCGAACAGTGCCTTGTGGTTGTACACT---GGCTTGTCGCCGCTGGTG-TCC- 1575 Query 244663 CACAAACTCGTTG--AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || |||| ||| | | || | |||| |||||| ||||| | ||| |||| | Sbjct 1574 -ACGAACT--TTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCA 1518 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 |||||||||| ||||| ||||| | |||||| | || || || |||| || || || Sbjct 1517 GTGTACTGGATGATCTCCGTGCACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGG 1458 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||| | |||||||||||||||| | || ||||| || | || Sbjct 1457 TTGCTTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGA 1398 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | |||| || ||| | ||| || || ||| || | ||||||||| Sbjct 1397 CTTTCAAGGATTTTGAACCACAATTCCTGGGCGCGGATGGTCTTGAACCCTTTGCCCTCT 1338 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC--CGG 244958 |||||||| || ||||| || |||||||| ||||||| |||| ||| ||| Sbjct 1337 GCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGG 1278 Query 244959 GGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 | |||| | || || | | |||||| ||| || || || | || |||||| | Sbjct 1277 GCCACGTTG--GGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAA 1220 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC---TGCTCGTCCGAGCCAG 245075 |||| |||||||| | || | ||| ||||| | || | | |||||| || Sbjct 1219 GGTCTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCA---CCGT 1163 Query 245076 TGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAG 245135 ||| ||| ||| ||||| || ||||| ||||| ||||||| ||||| | ||| | | Sbjct 1162 GGTTTTTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGG 1103 Query 245136 CGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGA 245195 ||| | ||| |||||| || || ||||| || || || ||||||||| Sbjct 1102 CGAACGAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGA 1043 Query 245196 TGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT 245255 |||||| | || | |||||||| | |||||||||||| |||||| ||| | Sbjct 1042 CGCGCAGCATGGGGATGATGCCGTTGCTGGAACCGTTGGTGCCCCGAATGTAGCTGCCTT 983 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 | | | | | |||||| | || | || ||||||| |||| |||| ||||| Sbjct 982 GGGAGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGC 923 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 || ||| | |||||| || || || |||||||| ||||||| | |||| |||| Sbjct 922 AGGACTTCAAGGTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGC 863 Query 245376 AGGAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTA 245434 | |||| ||||| |||| ||||| | | | |||||| || || || ||||||| || Sbjct 862 ACGAGGCGAGCTGCGGGCGTGGGG-TCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTG 804 Query 245435 AAGTA 245439 ||||| Sbjct 803 AAGTA 799 >seq3919 Length=4506 Score = 141 bits (156), Expect = 2e-28 Identities = 491/753 (65%), Gaps = 26/753 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| ||||| | || || ||| |||||||| || || | ||| |||||| || Sbjct 531 GATCCAGCACAACGATATTTGGCAAATGTACAAAAAAGCTGAAGCCTCGTTCTGGACTGC 590 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 || ||| | ||| |||| | |||| | |||||| | || | || |||||| Sbjct 591 GGAAGAGCTGGACTTGGCACAAGACAGTAAAGACTGGGATAAAATGACGGACAACGAACG 650 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| ||| ||| | |||||||| ||||| |||||||||||||| || || ||||| Sbjct 651 GTTCTTCATCAGCAACGTCCTGGCCTTTTTCGCAGCCTCTGACGGCATTGTAAACGAGAA 710 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACT--TTGAGGCGCGCTGCTTCTACGGC 42521 |||| | | ||| ||| || || || ||| ||||| | ||||||||||| Sbjct 711 CCTGTTGATGAACTTCTCGAACGAAGTCCA--ACTGCCGGAGGCAAGGTGCTTCTACGGG 768 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||||||||| || ||| | ||| | || || ||| | || | |||||||| Sbjct 769 TTCCAGATAGCCATTGAAAACATCCACGCAGAAGTATACTCTCTTCTTATTGACACGTAC 828 Query 42582 AT----CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGA-GACGATGCCCT 42636 || |||| | || || || || | || ||||| || || || | | Sbjct 829 ATTAAAAATGGA-AAAGAAAAGGATA---GGTTGCTGAATGCCATCGATAACATTGACAT 884 Query 42637 GCATCAAGAAGAAGGCGGACTGG-GCGCTCAACTGGATCGAGAGTCCCG---ACGCAACG 42692 | || | ||||| || ||| || || | |||| | | ||| | || || Sbjct 885 G-GTCCGCCAAAAGGCCGATTGGTGCCTTCGA-TGGACC---AACGCCGAAAATGCGTCG 939 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | ||| ||| | ||||| || |||| ||||||||||||||| || || | || Sbjct 940 TTTGCCGAAAGGGTTGTAGCTTTCGCCGCGTGCGAGGGCATCTTCTTTTCCGGGTCGTTT 999 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || | |||||| | ||| || || | ||||||||| | |||||| ||||| Sbjct 1000 TGTGCCGTGTTCTGGTTAAAGAAGCGGGGTTTGATGCCCGGCTTGTGCTTCTCCAACGAG 1059 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 ||||||||| | |||||||| |||| | || || || ||| | |||| | | |||| Sbjct 1060 CTCATCAGCCGCGACGAGGGCTTGCACTGTGATTTCGCGTGCTTGCTGTACAAGGACCAC 1119 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 | | | || | | | | | || | | | |||||| | | || ||||| ||| Sbjct 1120 TTGATAAATAAACTCCCTCAACAACGCATTCACGATATCATCGGGAACGCTGTGGACATC 1179 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACGACC 42990 || || | ||| | | | | |||||||| || | || ||||| |||| | Sbjct 1180 GAAAAAGTTTTCGTGTCCAAAGCATTGCCCGTGGAATTGATAGGGATGAATTCCAC--CT 1237 Query 42991 TCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | |||||| | |||||| ||||| ||| |||| Sbjct 1238 TGATGTGCGAATACATCGAGTACTGCGCAGACC 1270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944255531546880