Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6148 150 4e-31 seq4042 125 2e-23 seq229 111 4e-19 seq2749 109 1e-18 seq1992 109 1e-18 seq6558 98.7 2e-15 seq1888 89.7 1e-12 >seq6148 Length=2258 Score = 150 bits (166), Expect = 4e-31 Identities = 177/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | |||| ||| ||| |||||||| || ||||| Sbjct 1117 TCCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACT 1176 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| ||||||||||| |||||||| ||||| |||||| | || Sbjct 1177 CAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGG 1236 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| ||||| || |||||||| ||| || || |||||||| || | || || | ||| | Sbjct 1237 GATACCTTCCTTGTCCTGGATCTTTTGC-TTGACGTTTTCGATGGTGTCACTTGGTTCCA 1295 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 | ||||| || || || || || || |||||||| ||||| || ||||| |||||| Sbjct 1296 CATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTTGTTAT 1352 >seq4042 Length=4160 Score = 125 bits (138), Expect = 2e-23 Identities = 158/212 (75%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| ||||||| ||| || |||| | |||| ||||| ||||| || || Sbjct 2629 TACAT-TCCACCACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTA 2571 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 |||| | | || || |||||||| | || || || || ||||| ||||||||||| Sbjct 2570 GTCGCCCAAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTG--- 2514 Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGC 288415 ||| ||| || ||||| || |||||||| || || |||||||| || || | |||| Sbjct 2513 ATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGC-TTCACGTTCTCGATCGTGTCGC 2455 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||| ||| || || || || ||| |||||||| Sbjct 2454 TCGGTTCGACGTCAAGGGTAATCCTCTTCCCG 2423 >seq229 Length=1895 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 |||| ||||| | |||| |||||| || | || |||||| || | || |||||| Sbjct 893 AGTAGCAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCT 834 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| ||||||| | | || | |||||||| ||| Sbjct 833 TCCAGCTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCC 774 Query 288382 TGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || || |||||| || ||||| | || | ||||||| || || || | || ||||| Sbjct 773 TGAATCTTTCGC-TTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGT 715 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| |||||||| ||||| ||||| || || || Sbjct 714 CTTACCGGTCAGGGTCTTTACGAAAATTTGTAT 682 >seq2749 Length=6745 Score = 109 bits (120), Expect = 1e-18 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 || ||||||| ||||| | | || || || | ||| || |||||||| || || | Sbjct 5272 CAGGTCCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAAT 5213 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || || || ||||| | || || || ||||| ||||| |||||||| | Sbjct 5212 CGGACAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAG 5153 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| |||||||| ||||||||||| | || ||||| || | ||||| | | Sbjct 5152 GCGGGATACCTTCTTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCT 5093 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 | || | | || |||||||| ||||||| ||||||||||||| Sbjct 5092 CCACGTACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAATA 5048 >seq1992 Length=1353 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | ||| || | || | |||| ||||| || ||||| || || | Sbjct 854 TCCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGA 913 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| |||||||| || ||||| || || || |||| ||||||||| || Sbjct 914 CAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGG 973 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| ||||| || || || || ||| |||| ||| || || || | || | || | Sbjct 974 GATGCCTTCCTTGTCTTGAATCTTTTGCTT-CACATTCTCAATCGTGTCCGAGGGCTCGA 1032 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || | || || ||||||||||| || ||||||||||| || ||||| Sbjct 1033 CATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq6558 Length=25225 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| ||||| || | ||| || || || || || ||||||| | Sbjct 2753 CCCCCCCGGAGGCGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAG 2694 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || || ||||| || || || |||| || ||||| ||| Sbjct 2693 AGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGG 2634 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||| || ||| |||| ||||| || || | || | || || Sbjct 2633 ATCCCTTCCTTGTCCTGAATCTTTTGCTTG-ACGTTCTCAATGGTGTCCGAGGGCTCGAC 2575 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || ||||||||||| |||| || || || ||||||||||| Sbjct 2574 GTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq1888 Length=501 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 288339 GAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCA 288397 |||||| |||||||||||| | ||||| ||||| || |||||||| ||| || || | Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGC-TTGA 59 Query 288398 CGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 |||| || || | ||| || | || || ||||||||||| || || || |||| || | Sbjct 60 CGTTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTT 119 Query 288458 TGACGAATATCTGCAT 288473 | ||||| || ||||| Sbjct 120 TTACGAAAATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179547269685664