Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3675 109 7e-19 seq3919 104 3e-17 >seq3675 Length=4586 Score = 109 bits (120), Expect = 7e-19 Identities = 559/872 (64%), Gaps = 37/872 (4%) Strand=Plus/Minus Query 114459 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 114518 |||| || | | ||| ||||||| || || || | |||| ||| ||||||||| Sbjct 1570 ACTTTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACT 1511 Query 114519 CTATAATTTCCGTACACAAATTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATTTG 114575 || || ||||| ||||| || |||| ||||| || |||||||| | || || | Sbjct 1510 GGATGATCTCCGTGCACAAGTT---ACTCGATTTAATAGTTCCCAAGTTTTGCTGGTT-G 1455 Query 114576 ACTTTGTG-TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 |||| | || || | |||||||| |||||||| || || || || || ||| || Sbjct 1454 CTTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTG--AC 1397 Query 114635 TTG--AGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCCT 114689 || || || ||| | || ||| | | ||| ||| || |||| Sbjct 1396 TTTCAAGGATTTTGAACCACAATTCCTGGGCGCGGA---TGGTCTTGAACCCTTTGCCCT 1340 Query 114690 CCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 114749 | |||||||||| | ||| | || ||| ||||| || ||| || || || Sbjct 1339 CTGCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTAC 1280 Query 114750 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGA 114809 | ||| | || ||||| | | ||| || || | || || ||||||||||| | Sbjct 1279 GGGCCACGTTGGGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAA 1220 Query 114810 GGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 114869 ||||||||||||| | || |||| || || || ||| || | || || || || | Sbjct 1219 GGTCTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGT 1160 Query 114870 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 | ||| ||||| || || | | |||||||||||||| || ||||||| |||| Sbjct 1159 TTTTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGA 1100 Query 114930 TTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGC 114986 || ||||| || | || | |||| || |||| || ||| | || || |||| Sbjct 1099 ACGAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGC 1040 Query 114987 GAAGCATTGGAATGATACCATCAGATTG-GCCATTTGTCCCCCGAA--TACGAGACTTAT 115043 | ||||| || ||||| || | | | | || || || ||||||| || | || | Sbjct 1039 GCAGCATGGGGATGATGCCGT-TGCTGGAACCGTTGGTGCCCCGAATGTAGCTGCCT--T 983 Query 115044 TGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 115103 || | | | |||||| | ||| || ||||| || |||| ||| |||| Sbjct 982 GGGAGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGC 923 Query 115104 ACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC 115163 | | | | || |||||||||| ||||| ||| |||| | | | || ||| Sbjct 922 AGGACTTCAAGGTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCAT---GGTCAGCAAGA 866 Query 115164 AGCTCGA---CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 115220 ||| ||| | || || | ||| || || |||||||||||||| || || ||||| Sbjct 865 AGCACGAGGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAG 806 Query 115221 TGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCC 115278 |||| ||| | | | |||| | ||||||||| | | || | ||||| | Sbjct 805 TGAA-GTACATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCG-ATGTCCGCTTT 748 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGT 115310 ||| |||||||| || || ||||| | ||||| Sbjct 747 GTGGATACCGATGGAAACGCGCATGAGCATGT 716 >seq3919 Length=4506 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| ||| |||||| || || |||||||||| || ||||| | |||||||||| Sbjct 1079 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACCCCGCTTC 1020 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 || |||||||| | |||||||| || || || |||||||| ||||| Sbjct 1019 TTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTC 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597300674471040