Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3675 141 9e-29 seq1992 125 7e-24 seq229 109 5e-19 seq2749 100 3e-16 seq6558 87.8 2e-12 seq6148 87.8 2e-12 seq1888 86.0 6e-12 >seq3675 Length=4586 Score = 141 bits (156), Expect = 9e-29 Identities = 610/955 (64%), Gaps = 31/955 (3%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 ||||||||||||||||||||||| || || | | |||| || | || || | |||| Sbjct 1553 GACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTGCAC 1494 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || ||||| || ||| || |||| ||||| ||| || |||| |||||| | ||| Sbjct 1493 AAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGAGTCC 1434 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||| | |||||||| || || ||||| ||||| |||||| ||| | ||| || | Sbjct 1433 TTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTT--GAACCACA 1376 Query 154767 CTT-CGCGCCTCAACTTGACAAGTAAATCGATTTTCGCT----CTCATATTGTTCGTACA 154821 || | | | | | | | | | | ||| | || ||| || | |||||| Sbjct 1375 ATTCCTGGGCGCGGATGGTC---TTGAACCCTTTGCCCTCTGCCTCGTACTTGGCGTACA 1319 Query 154822 GTTTTTCAAACTCTAAACTGTACACGTCCGACA--AACCGGGACAGCGGTCGGGACACAT 154879 |||| ||||| | | || || |||| || || |||||| | Sbjct 1318 AGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCCA--CGTTGGGACAGAA 1261 Query 154880 CAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGC 154939 ||| | |||| ||| |||||||| ||||| || | || || | ||||| || Sbjct 1260 CAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCACATCGC 1201 Query 154940 GTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAA 154999 ||| |||| || || || || || | || |||| ||| |||| ||| || Sbjct 1200 GTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATCCAAGAA 1141 Query 155000 ATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT--- 155056 ||| | | ||| |||||||||||||| | || | ||| | || ||| ||||| || Sbjct 1140 CTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCGCTTGCC 1081 Query 155057 TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCC 155116 ||| ||||| || |||| || | | ||| | ||||||| || || | ||| Sbjct 1080 TCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATGATGCC 1021 Query 155117 GCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCC--GCGAGC--ACGCGCTTTATGAA 155172 | || | ||||||||||| || || |||||| | |||| | || | ||| | Sbjct 1020 GTTGCTGGAACCGTTGGTGCCCCGAATGTAGCTGCCTTGGGAGCGAATGCCGTGGATGGA 961 Query 155173 CATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGT 155232 | || | || ||| |||| || || || ||| | ||| || |||| Sbjct 960 ----TAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGCAGGACTTCAAGGTGTCGT 905 Query 155233 ACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTT 155292 | || |||| ||||||||| || |||| |||| |||||| ||||| | | || || Sbjct 904 AGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGCACGAGGCGAGCTGCGGGC 845 Query 155293 GAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA 155352 | ||| ||||| || | || || | ||||| || || ||||| | | Sbjct 844 GTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGAAGTACATGTTGCTCATCA 785 Query 155353 AGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCA 155412 ||||||| || ||||| || || ||||| ||| |||||||| | ||||||| Sbjct 784 AGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGGATACCGATGGAAACGCGCA 725 Query 155413 TCAGCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGATGCGCTTTAA---GTACCCAT 155469 | |||||||| || |||||| | | |||||||||| ||| || ||| | Sbjct 724 TGAGCATGTGCTGCGGGCGCTCGACGATCTGGCCGTTGAT---CTTCAAAAGGTAGGCCC 668 Query 155470 TTTCCAAAGTTTTATACGCAAAATACTTGTATTCGTAGTCTCGTTTGTAATCTAT 155524 | ||||| ||||| || | || || | ||| || |||| || ||||| || || Sbjct 667 TCTCCAAGGTTTTGAACCCGAAGTAGTCGTACCCGAAGTCGCGCTTGTAGTCGAT 613 >seq1992 Length=1353 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | |||||| | || | ||| | ||||| || || |||||||| | Sbjct 855 CCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGAC 914 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| | ||| || || ||| |||| | |||||| || |||||||| Sbjct 915 AGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGG 974 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || |||||||| ||| ||| | || || || || || Sbjct 975 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACA 1034 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| |||||| ||||| | || || |||||||||||||| Sbjct 1035 TCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq229 Length=1895 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||| | ||| | |||||| |||| |||||| || | | | ||| ||||||| ||| Sbjct 887 AGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGC 828 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| ||||| | || |||||||| | |||| | | | |||||||| || || || Sbjct 827 TGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATC 768 Query 64358 TTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416 ||| |||| || | | | || || | |||| ||||| || | ||| | ||||| || Sbjct 767 TTTCGCTTGACGTTCACGATCGTGTCGCTCGGC-TCCACGTCCAAAGTAATCGTCTTACC 709 Query 64417 GGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || |||||||||||||| || Sbjct 708 GGTCAGGGTCTTTACGAAAATTTGTAT 682 >seq2749 Length=6745 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 ||||| || | || || || ||||| ||||||||||| | | || || | ||||| Sbjct 5249 ACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCTTCC 5190 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||||||||| |||| || ||||| ||||| || || || |||||||| || || Sbjct 5189 AGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCCTGG 5130 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 |||||| ||| || | | || || | | ||||| | | ||| | ||||| Sbjct 5129 ATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCGTCTTA 5070 Query 64415 CCGGTCAAAGTTTTTACGAA 64434 |||||||| || || ||||| Sbjct 5069 CCGGTCAATGTCTTGACGAA 5050 >seq6558 Length=25225 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || || || |||| || | ||| || || ||| || Sbjct 2717 TCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAA 2658 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||| || |||||||| || || ||||| || || || || |||||||| || | Sbjct 2657 ATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTC 2598 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || || || | || | ||||| || ||||| ||||| || Sbjct 2597 TCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACA 2538 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 2537 AATATCTGCAT 2527 >seq6148 Length=2258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || | ||| ||||| |||||||| || | |||||| | ||||| | || Sbjct 1142 TGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCCAATTGT 1201 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || || || || || || || || || ||||| || || || || ||| Sbjct 1202 TTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTT 1261 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| || || | || |||| | ||||| || | || | ||| || || || Sbjct 1262 TGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTACCCGTA 1321 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| ||||||||||||||||| || Sbjct 1322 AGAGTCTTTACGAAAATTTGCATCTT 1347 >seq1888 Length=501 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||| || || || || || ||||| || || || || |||||||| || | Sbjct 5 ATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTC 64 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||||| | ||||| || | || | ||| || || ||||| ||||||||| Sbjct 65 TCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTTACG 124 Query 64433 AAAATTTGCATTTTAAT 64449 ||||||||||| || || Sbjct 125 AAAATTTGCATATTGAT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499600531470720