Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3675 212 6e-50 >seq3675 Length=4586 Score = 212 bits (234), Expect = 6e-50 Identities = 629/958 (66%), Gaps = 38/958 (4%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||| | |||||||| |||||| | | ||||| | ||||| | ||| | Sbjct 637 TACGACTACTTCGGGTTCAAAACCTTGGAGAGGGCCTACCTTTTGAAGATCAACGGCCAG 696 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | |||||| ||||| || |||| |||||||| ||||||| || ||| ||| Sbjct 697 ATCGTCGAGCGCCCGCAGCACATGCTCATGCGCGTTTCCATCGGTATCCACAAAGCGGAC 756 Query 93838 ATGCCGAATGTTTTGCGGGCTTTC-AGAG-----ACATGCGGGACAAGAGGTATACCATG 93891 || ||| ||| || || ||| || || | ||| | ||| || Sbjct 757 AT--CGA-------GCGAGCGATCGAGACCTACAACTTGATGAGCAACATGTACTTCACT 807 Query 93892 ---GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTC 93948 ||||| |||||||| |||||||| |||||||| || ||| | | ||||| ||| Sbjct 808 CACGCCACGCCGACCCTCTTCAACGCCGGGACCCCACGCCCGCAGCTCGCCTCGTGCTTC 867 Query 93949 CTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCG 94008 || |||| | |||| |||| |||| || || | ||||| | | ||| ||| || Sbjct 868 TTGCTGACCATGAAGGACGACAGCATCGAAGGGATCTACGACACCTTGAAGTCCTGCGCC 927 Query 94009 ACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGT 94068 |||| || ||||| ||||| ||||| | |||||| | | || || || Sbjct 928 TGCATCAGCAAGTACGCCGGGGGCATCGGTCTATCCATCCACGGCATTCGCTCCCAAGGC 987 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 |||||| || || ||||| || || ||||||| || |||| ||||| || |||||| Sbjct 988 AGCTACATTCGGGGCACCAACGGTTCCAGCAACGGCATCATCCCCATGCTGCGCGTCTTC 1047 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 ||| || | || || ||||| ||||| || || || | | | ||||| || ||||| | Sbjct 1048 AACGACACCGCACGGTACGTCGACCAAGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATG 1107 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || || ||||| |||||||||||||| | ||| | || || || |||||||| Sbjct 1108 TACCTTGAGCCGTGGCACGCGGACGTTTTTGAGTTCTTGGATTTGAAGAAAAACCACGGT 1167 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 |||| | | ||| | ||||| |||||||| | ||| | ||||||||||| ||| Sbjct 1168 GACGAGAACGCCCGCGCCCGCGACCTGTTCTACGCGATGTGGATCCCAGACCTTTTCATG 1227 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGG-AGT----CTT-TTTTGTCCCAATGAATGTCCC 94362 || ||||| | | |||| | || ||| ||| || |||||||| | || ||| Sbjct 1228 AAGCGCGT------ACAGTCCGACGGGCAGTGGACCTTGTTCTGTCCCAACG--TGGCCC 1279 Query 94363 GGA--CTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC 94420 | | ||| ||| || || | || ||| |||||| || ||||| | Sbjct 1280 GTAACCTGCACGAAACCTGGGGCGAGGAGTTCGAAACCTTGTACGCCAAGTACGAGGCAG 1339 Query 94421 AGGGCAAGGCCAGGAAGGTTAT-GGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTA 94479 ||||||| | ||| || | | ||||| ||||| | ||| | || Sbjct 1340 AGGGCAAAGGGTTCAAGACCATCCGCGCCCAGGAA-TTGTGGTTCAAAATCCTTGAAAGT 1398 Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 || || || || || || || ||||| | | |||||||||| |||| ||| |||| Sbjct 1399 CAAGTAGAAACCGGAACACCGTACATGCTCTACAAGGACTCTTGCAACCGCAAAAGCAAC 1458 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCG-AATCTGTGCACCGAGATTGTCGAGTATAC 94598 ||||| || | || || || | | | || ||||||| ||||| || |||| || Sbjct 1459 CAGCAAAACTTGGGAACTATTAA-ATCGAGTAACTTGTGCACGGAGATCATCCAGTACAC 1517 Query 94599 TTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTG 94656 | | |||||||||||||| || || ||| ||| |||||| | || | | |||||| Sbjct 1518 TGCCCCGGACGAGATTGCCGTTTGCAACTTGGCGTCCATCTGCTTGCCAAAGTTCGTG 1575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||| | || ||||| |||| ||| ||||| || ||| || |||| || Sbjct 1957 GACTGGGCGGAACTTCGCGCCAATGTCGCCAAGCACGGCGTACGCAACTCGTTGCTCGTC 2016 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || || ||||| |||||||| || | || || | || |||||||| | |||||||| Sbjct 2017 GCGCCAATGCCGACGGCCTCGACCTCACAAATTATGGGAAACAACGAATGCTTCGAACCA 2076 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| ||||| |||||||||| || ||||| || || || || | | |||||||| Sbjct 2077 TACACGACCAACATGTACAACAGACGTGTGCTTGCAGGAGAGTTTACGTGCGTCAACAAG 2136 Query 95224 CACCTCCTACGGGACCTGA 95242 ||| | | || ||| ||| Sbjct 2137 CACTTGTTGCGTGACTTGA 2155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494679367524480