Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3675 185 9e-42 seq6148 122 9e-23 seq229 96.9 3e-15 seq1888 91.5 1e-13 seq6558 89.7 5e-13 seq2749 86.0 6e-12 >seq3675 Length=4586 Score = 185 bits (204), Expect = 9e-42 Identities = 617/938 (66%), Gaps = 39/938 (4%) Strand=Plus/Minus Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 || ||||||| || || ||||| |||| || | | | ||||||| | |||||| | | Sbjct 1556 ATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTG 1497 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 || | ||| || |||| || ||||| |||||||| ||||||||||| ||||| | | Sbjct 1496 CACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGAG 1437 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACCTA 153776 || ||| |||||||||||||| ||||| || ||||| |||| | ||| |||| Sbjct 1436 TCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTTGAACCA- 1378 Query 153777 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCG--GCCCTCGCTCTCGTATCGCTCGT 153834 || ||||| || || | || || | |||||| |||||| ||| Sbjct 1377 --CAATTCCTGGGCGCGGATGGTCTT--GAACCCTTTGCCCTCTGCCTCGTACTTGGCGT 1322 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGC--CGGGACACTGATGCGGACA 153892 ||| || ||||| ||||| || ||| ||| |||| ||| | || ||||| Sbjct 1321 ACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCCAC-GTTG-GGACA 1264 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 | || | |||| |||||| | ||||| |||||| || || || | ||| | Sbjct 1263 GAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCACAT 1204 Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA- 154011 |||||| | |||||||| || | | ||| | || ||| |||| || | Sbjct 1203 CGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATCCAA 1144 Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCT 154071 | || | | | | ||| |||||||| || |||| ||| | ||| | | || || |||| Sbjct 1143 GAACTCAAAA-ACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCGCT 1085 Query 154072 T---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128 | |||||| || ||||||| || | | | |||||||||||||| |||||| | Sbjct 1084 TGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATGA 1025 Query 154129 GGCCGCTTGC-GGTGCCGTTGGT----CGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183 |||| |||| || |||||||| ||||| | |||||| ||| ||| | Sbjct 1024 TGCCG-TTGCTGGAACCGTTGGTGCCCCGAATGTA----GCTGCCTTGGGAGCGAATGCC 970 Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTT--TGATATGGCAG-CGCAGTCGCCCAG 154240 || | | | || ||||| ||| ||||||| |||| |||| ||||| || Sbjct 969 GTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGAT---GCAGGCGCAGGACTTCAA 913 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACAT 154300 || |||||| || |||||||| ||||| | | |||||||| ||||| | Sbjct 912 GGTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGCACGAGGCGAG 853 Query 154301 TTGCGGAATGCGCGTTCCCGCCGAA-AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTT 154359 ||||| | | | ||||| || |||||||| || | ||||| || || | | Sbjct 852 CTGCGGGC-GTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGAAGTACATGT 794 Query 154360 GGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCG 154419 |||||||| | ||| || ||||| || ||||| || | ||| || |||| | Sbjct 793 TGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGGATACCGATGG 734 Query 154420 CGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCT-ATTGTCAATCTTCAAGAGA 154478 ||||||||||||||||||||||| || ||| ||| ||| || |||||||| || Sbjct 733 AAACGCGCATGAGCATGTGCTGCGGGCGCTCGACGA-TCTGGCCGTTGATCTTCAAAAGG 675 Query 154479 TATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 || | | || | ||||||| | ||||| || | ||| Sbjct 674 TAGGCCCTCTCCAAGGTTTTGAACCCGAAGTAGTCGTA 637 >seq6148 Length=2258 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | | |||||||| ||||||||||| ||| Sbjct 1118 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTC 1177 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||| |||| |||| ||||| ||||| || || || Sbjct 1178 AAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGG 1237 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||||| || | | ||| | |||||| | | ||||| Sbjct 1238 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACA 1297 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || ||||| ||||| ||||| ||||| Sbjct 1298 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq229 Length=1895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 138420 TGACTCCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 || || |||| |||| |||||||||||||| | ||| ||| || || || ||||||| Sbjct 877 TGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGG 818 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || ||||||| ||| | | ||||||||||||| || ||| | || | Sbjct 817 CGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGA 758 Query 138539 ATTGTTCCACG---GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 ||| |||| |||||| ||| |||||| || | || | ||| ||||| ||||| | Sbjct 757 --CGTT-CACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGG 701 Query 138596 TTTTTACAAAAATCTGCATG 138615 | ||||| ||||| || ||| Sbjct 700 TCTTTACGAAAATTTGTATG 681 >seq1888 Length=501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| ||||||||||| || || || |||||||| ||||| ||| ||||| || | | Sbjct 3 AGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGT 62 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | ||| || | | |||||| |||| ||| | |||||||| |||| ||||||| Sbjct 63 TCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTTA 122 Query 138602 CAAAAATCTGCAT 138614 | ||||| ||||| Sbjct 123 CGAAAATTTGCAT 135 >seq6558 Length=25225 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | || || |||||| | ||||| || | | | Sbjct 2718 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAA 2659 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || | || |||||||| || || || ||||| ||||| || ||||| || | | Sbjct 2658 AATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTT 2599 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | | ||| || || | || | ||| || || |||| ||||| || Sbjct 2598 CTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCAC 2539 Query 138603 AAAAATCTGCATGGCTT 138619 ||| |||||||||| || Sbjct 2538 AAATATCTGCATGGTTT 2522 >seq2749 Length=6745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| |||| || | | | || |||||||| |||||||| ||| || |||||| Sbjct 5255 CGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCA 5196 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || |||| | || || ||||||||||| || || |||||||||||| Sbjct 5195 TCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTG 5136 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTC--CACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || ||||||| || | |||| | |||||| | | |||||| | | || | Sbjct 5135 TCCTGGATTTTTCCCTTGA--CGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAA 5078 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAA 138605 ||| ||||| |||| || || || || Sbjct 5077 TCGTCTTACCGGTCAATGTCTTGACGAA 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496218431151360