Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6148 113 3e-20 seq6558 89.7 4e-13 seq1992 82.4 5e-11 >seq6148 Length=2258 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| | || ||||| |||||||| || || | | | | ||||| Sbjct 1135 AACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTC 1194 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--A 15084 |||||||| || ||| | || | ||| ||||| || || || ||||||||||| Sbjct 1195 CAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTG 1254 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 | |||||| || || |||| || || || || ||| || || | |||||||||| Sbjct 1255 GATCTTTTGC--TTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTT 1312 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || ||||| ||||| ||||||||||| || Sbjct 1313 TTACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq6558 Length=25225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| | || || || |||||||| ||| ||| ||| |||| || || ||| Sbjct 2729 TGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGT 2670 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAA--TTT 15091 || || || | ||||| || ||||||||| || || ||||||||||| || ||| Sbjct 2669 TTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTT 2610 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || || | || || || || || ||||| |||||||| || || || | Sbjct 2609 TGC--TTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCG 2552 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAA 15187 ||| ||||| ||||| || ||||| ||||||| || Sbjct 2551 TCAACGTTTTCACAAATATCTGCATGGTTTGAAAGAA 2515 >seq1992 Length=1353 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 ||||| ||||| |||||||| || | | ||||||| || ||||| || || | Sbjct 891 TCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAA 950 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAA--TTTTGCTTTTTACAA 15103 ||||| |||||||| ||| || || ||||||||||| || |||||| || ||| Sbjct 951 ATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGC--TTCACAT 1008 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 | || || || || || || || ||||| ||||| || || || || || || | Sbjct 1009 TCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGA 1068 Query 15164 CAAAAATTTGCAT 15176 | ||||||||||| Sbjct 1069 CGAAAATTTGCAT 1081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357361126692080