Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1992 123 2e-23 seq3675 87.8 2e-12 >seq1992 Length=1353 Score = 123 bits (136), Expect = 2e-23 Identities = 169/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | |||||| || | ||| | |||||| || ||||||||||| Sbjct 854 TCCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGA 913 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || | |||||| || || | ||||| ||||| ||||||||||| Sbjct 914 CAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGG 973 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| || || ||||| | | || | ||||||| |||||| Sbjct 974 GATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGAC 1033 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAT 127120 || | ||| | || || ||||| || || || || ||||| ||||||| |||| Sbjct 1034 ATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATGG-TTAT 1087 >seq3675 Length=4586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 ||| || |||||||| || |||||| |||||||| | | ||||| | ||||| | Sbjct 1557 GATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGT 1498 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGG 146756 ||| | ||| || | || || | ||||| |||| ||||| || |||||| | Sbjct 1497 GCACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGA 1438 Query 146757 GTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGAC 146792 |||||||||||||||||||||| |||||||| || Sbjct 1437 GTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTAC 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475458670629120