Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3675 185 8e-42 seq6148 111 1e-19 seq2749 87.8 2e-12 seq1992 84.2 2e-11 >seq3675 Length=4586 Score = 185 bits (204), Expect = 8e-42 Identities = 1137/1801 (63%), Gaps = 77/1801 (4%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || |||||||||||||| | || || | ||| | |||||||| |||| | Sbjct 712 CAGCACATGCTCATGCGCGTTTCCATCGGTATCCACAAAGCGGACATCGAGCGAGCGATC 771 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || ||| | |||||| | | | ||||| ||||| | || || | ||| | Sbjct 772 GAGACCTACAACTTGATGAGCAACATGTACTTCACTCACGCCACGCCGACCCTCTTCAAC 831 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGC 123095 ||||| || || ||| | | ||||| || ||||| ||| || || |||||| Sbjct 832 GCCGGGACCCCACGCCCGCAGCTCGCCTCGTGCTTCTTGCTGACCATGAAGGACGACAGC 891 Query 123096 ATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGC 123155 ||| || ||||| || || ||| ||||| | || ||| | | ||| ||| Sbjct 892 ATCGAAGGGATCTACGACACCTTGAAGTCCTGCGCCTGCATCAGCAAGTACGCCGGGGGC 951 Query 123156 ATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGA 123215 || || | | | |||| | | | || || ||| ||| | ||||| |||| Sbjct 952 ATCGGTCTATCCATCCACGGCATTCGCTCCCAAGGCAGCTACATTCGGGGCACCAACGGT 1011 Query 123216 ATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGAC 123275 | | ||| || |||||||||| || | ||| || ||| ||| |||||||| Sbjct 1012 TCCAGCAACGGCATCATCCCCATGCTGCGCGTCTTCAACGACACCGCACGGTACGTCGAC 1071 Query 123276 CAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGAT 123332 || ||||| ||| ||||| ||| || | || || || || || |||||||||| || Sbjct 1072 CAAGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATGTACCTTGAGCCGTGGCACGCGGAC 1131 Query 123333 GTGTACGATTTTTTAAATTTAAAACGCAAC-ATGGGGGCGGAAGAAAAGAAA-GCCCGCG 123390 || | || || || |||| || ||| | || | || |||| ||||||| Sbjct 1132 GTTTTTGAGTTCTTGGATTTGAAGAAAAACCACGGTGACG--AGAACGCCCGCGCCCGCG 1189 Query 123391 ATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCG 123450 | |||| ||||| | ||| | || || | || ||| |||||| | |||||| Sbjct 1190 ACCTGTTCTACGCGATGTGGATCCCAGACCTTTTCATGAAGCGCGTACAGTCCGACGGGC 1249 Query 123451 TGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG--CTTGAGCGACGTTTACGGCAATCA 123508 |||| | | | |||||| | ||| |||| | || ||| | ||| | | Sbjct 1250 AGTGGACCTTGTTCTGTCCCAAC--GTGGCCCGTAACCTGCACGAAACCTGGGGCGAGGA 1307 Query 123509 GTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGTTCCG-G 123567 ||| || |||||||| | |||||| || |||||| |||| | |||| | Sbjct 1308 GTTCGAAACCTTGTACGCCAAGTACGAGGCAGAGGGCAAAG-GGTTCAAGACCATCCGCG 1366 Query 123568 CACGTGATTTGT---TCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACA 123624 | | || |||| ||||| | || |||| ||||| ||||||||||| ||||||| Sbjct 1367 CCCAGGAATTGTGGTTCAAAATCCTT---GAAAGTCAAGTAGAAACCGGAACACCGTACA 1423 Query 123625 TGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAAT 123684 |||||||||| ||| | |||||| | |||| ||| ||| ||||||||||| || |||| Sbjct 1424 TGCTCTACAAGGACTCTTGCAACCGCAAAAGCAACCAGCAAAACTTGGGAACTATTAAAT 1483 Query 123685 GTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTA 123744 ||||| | ||| | || || ||| | |||| | | || | | ||||| || | Sbjct 1484 CGAGTAACTTGTGCACGGAGATCATCCAGTACACTGCCCCGGACGAGATTGCCGTTTGCA 1543 Query 123745 ATTTGGCTTCGATTTGCGTG-AATCGTTGCGTCGAAAACGGCGCTTTTAA-----TTTCC 123798 | ||||| || || ||| || | ||| ||| || | | ||| || | | | Sbjct 1544 ACTTGGCGTCCATCTGCTTGCCAAAGTT-CGTGGACACCAGCGGCGACAAGCCAGTGTAC 1602 Query 123799 AAACGCTCAAACGCA----------TAACAAAAACTGTAGTAAAGAATTTGAACAAAATT 123848 || | | || ||| | ||||| || || |||||| | Sbjct 1603 AACCAC---AAGGCACTGTTCGATGTTGTTAAAACCGTGACCGTCAACTTGAACCGTGTC 1659 Query 123849 ATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCG 123908 ||||| || || | || || ||||||| || || | || ||| || ||| | || Sbjct 1660 ATCGACGTCAACTACTACCCAGTGGAGGAGGCTCGCTACTCCAATATGCGCCACCGCCCA 1719 Query 123909 GTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAA 123968 | || ||||| | |||||| | ||||||||||| | || ||||| | || | |||| Sbjct 1720 ATTGGGCTGGGCGTCCAAGGGCTTGCCGACGCGTTCATTTTGATGCGCTTTCCATTCGAA 1779 Query 123969 AGCGACGAAGC---AAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCT 124025 ||||| || || | | ||| || | | | ||| |||||| || || | || ||| Sbjct 1780 AGCGAAGAGGCCCGACAATTG---AACAAGGAGATATTCGAAACCATGTACTTCGCCGCG 1836 Query 124026 TTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGC 124085 || ||| ||||| || || ||| ||||| | ||| | ||| | Sbjct 1837 ATGACCGCGTCTTGCGAGGAGGCCGAACGCTTCGGACACTACGAGACCTACCCAGGCTGT 1896 Query 124086 CCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGG 124145 || | | ||| || || || ||||||||||| | ||| || || | ||| Sbjct 1897 CCAGTCTCCAAAGGCATCTTCCAACCGGACATGTGGAACGTTACCCCAACGGACCGATGG 1956 Query 124146 GACTGGAGCGTTTTAAAACAACGC----ATATCG--ACGCACGGTTTGCGTAACTCGCTG 124199 |||||| ||| ||| ||| || ||| | |||||| | || |||||| || Sbjct 1957 GACTGG-GCG-----GAACTTCGCGCCAATGTCGCCAAGCACGGCGTACGCAACTCGTTG 2010 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 | || ||| ||||||||||| | || | |||||| | ||||||||||||| |||| Sbjct 2011 CTCGTCGCGCCAATGCCGACGGCCTCGACCTCACAAATTATGGGAAACAACGAATGCTTC 2070 Query 124260 GAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG-AT 124318 || || | ||| | ||| ||||| |||| ||| | || || || ||| | ||| | Sbjct 2071 GAACCATACACGACCAACATGTACAACAGACGTGTGCTTGCAGGAGAGTTT-ACGTGCGT 2129 Query 124319 AAATCATCATTTGGTGGACGACTTGGTGGCGTT--AAATTTGTACGATGAAAACATGCGC 124376 || | || ||| || |||||| | ||||| | || || || || | ||||| Sbjct 2130 CAACAAGCACTTGTTGCGTGACTTGATCGCGTTGAACATCTGGAC--CCCAAGCGTGCGC 2187 Query 124377 AACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCG---ATTCCGGAACAC 124433 ||| | || ||||| | || || || || | || | | |||| | || Sbjct 2188 AACCAGATCATTGCCGATGGAGGATCTGTTCA---AAACGTTAAGGGCCTTCCCAAGCAG 2244 Query 124434 GTCAAGCAACTGTACAAAACCGTGTGGGAAATGA-AAAATAAACGATTAATTGAAATGGC 124492 ||| | |||||||| ||||| |||||||| | || | || | | || ||||| Sbjct 2245 TACAAAGATCTGTACAAGACCGTCTGGGAAATCAGCCAAAAGACTA-TCCTTACCATGGC 2303 Query 124493 CGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACC 124552 || ||||| || || | || || ||||||||| ||| |||||| | || | | Sbjct 2304 CGCAGACCGTGGTGCATTCATCGACCAAAGTCAAAGTTTGAACGTGCACATCGCCG---C 2360 Query 124553 CACCTACGCCCGCA---TGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAAC 124609 | ||| | || | | ||||| || ||| | |||| |||| | || || ||||| Sbjct 2361 CCCCTCCACCGGAAAGTTGACCTCAATGCACTTTTACGCCTGGAAGAAGGGTCTTAAAAC 2420 Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 || ||||| ||||| | || || |||||||||||| || || || || ||| | Sbjct 2421 CGGTATGTACTACTTGCGCACTCGTCCCAAGGCCGATGCCATCCAGTTCACTGTTGACCA 2480 Query 124670 A 124670 | Sbjct 2481 A 2481 >seq6148 Length=2258 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || | |||||||||||| || || || || | ||| ||| ||||||||| Sbjct 1142 TGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCCAATTGT 1201 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | ||||| || || || || || ||||| || || || || ||| Sbjct 1202 TTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTT 1261 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| ||| | |||||| | || || ||||| |||| ||||| || || Sbjct 1262 TGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTACCCGTA 1321 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| |||||||||||| Sbjct 1322 AGAGTCTTTACGAAAATTTGCATC 1345 >seq2749 Length=6745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | ||| ||||| |||| || || ||||||||||| || |||||| Sbjct 5268 TCCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGA 5209 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| |||| || || || ||| | |||| ||| || ||||| ||||| Sbjct 5208 CAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGG 5149 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT-ACGGTGTCGGAAGACTCGA 45291 || |||||||| || || |||||| |||| || | | | |||||| || ||| | Sbjct 5148 GATACCTTCTTTGTCCTGGATTTTTCCCTTGA-CGTTCATGATCGTGTCGCTAGGCTCCA 5090 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGT 45316 | | | ||||| ||| || ||||| Sbjct 5089 CGTACAAAGTAATCGTCTTACCGGT 5065 >seq1992 Length=1353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | ||| | |||| ||| | || || || ||||| ||||| Sbjct 852 ATTCCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCC 911 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || ||||| ||||| || || | ||||| || || || || | Sbjct 912 --GACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGG 969 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || |||||||| ||||| || | || | ||||| || | || Sbjct 970 GAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCT 1029 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | || | || || ||||| || || || || ||||||||||| Sbjct 1030 CGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451963152516480