Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3675 123 3e-23 seq3919 104 3e-17 >seq3675 Length=4586 Score = 123 bits (136), Expect = 3e-23 Identities = 562/872 (64%), Gaps = 37/872 (4%) Strand=Plus/Minus Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 |||| || | | ||| ||||||| || || || | |||| ||| ||||||||| Sbjct 1570 ACTTTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACT 1511 Query 116480 CTATAATTTCCGTACACAAATTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATTTG 116536 || || ||||| ||||| || |||| ||||| || |||||||| | || || | Sbjct 1510 GGATGATCTCCGTGCACAAGTT---ACTCGATTTAATAGTTCCCAAGTTTTGCTGGTT-G 1455 Query 116537 ACTTTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 |||| | || || | |||||||||||||| || || || || || || ||| || Sbjct 1454 CTTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTG--AC 1397 Query 116596 TTG--AGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCCT 116650 || || || ||| | || ||| | | ||| ||| || |||| Sbjct 1396 TTTCAAGGATTTTGAACCACAATTCCTGGGCGCGGA---TGGTCTTGAACCCTTTGCCCT 1340 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG-AGCCCT 116709 | |||||||||| | ||| | || || ||||| || ||| ||| | | | || Sbjct 1339 CTGCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCC-CAGGTTTCGTGCAGGTTA 1281 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 | ||| | |||||||| | | ||| || || | || || ||||||||||| Sbjct 1280 CGGGCCACGTTGGGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAA 1221 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 |||||||||||||| | ||| |||| || || || ||| || | || || || || Sbjct 1220 AGGTCTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGG 1161 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || ||| ||||| || || | | |||||||||||||| || ||||||| ||| Sbjct 1160 TTTTTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCG 1101 Query 116890 ATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | || |||||||| | || | |||| || |||| || || |||| || ||| Sbjct 1100 AACGAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACG 1041 Query 116947 CGAAGCATTGGAATGATACCATCAGATTG-GCCATTTGTCCCCCGAA--TACGAGACTTG 117003 || ||||| || ||||| || | | | | || || || ||||||| || | |||| Sbjct 1040 CGCAGCATGGGGATGATGCCGT-TGCTGGAACCGTTGGTGCCCCGAATGTAGCTGCCTTG 982 Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 || | | |||||||| | ||| || ||||| || |||| ||| ||| Sbjct 981 --GGAGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCG 924 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 || | | | || |||||||||| ||||| ||| |||| | | | || ||| Sbjct 923 CAGGACTTCAAGGTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCAT---GGTCAGCAAG 867 Query 117124 CAGCTCGA---CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180 ||| ||| | || || | ||| || || |||||||||||||| || || ||||| Sbjct 866 AAGCACGAGGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGA 807 Query 117181 ATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239 |||| ||| | | | |||| | ||||||||| | | ||||| | Sbjct 806 GTGAA-GTACATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTT 748 Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGT 117271 ||| |||||||| || || ||||| | ||||| Sbjct 747 GTGGATACCGATGGAAACGCGCATGAGCATGT 716 >seq3919 Length=4506 Score = 104 bits (114), Expect = 3e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| ||| |||||| || || |||||||||| || ||||| | |||||||||| Sbjct 1079 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACCCCGCTTC 1020 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC-CACACACGCGAA 127656 || |||||||| | |||||||| || || || |||||||| ||||| ||| | ||||| Sbjct 1019 TTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTCGCACGC-GGCGAA 961 Query 127657 CGCAAATAGACGCTCGGCAAAGGA 127680 || | | | |||||||| || Sbjct 960 AGCTACAACCCTTTCGGCAAACGA 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613452843262080