Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3675 123 4e-23 >seq3675 Length=4586 Score = 123 bits (136), Expect = 4e-23 Identities = 450/690 (65%), Gaps = 26/690 (4%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTA 203892 ||| | ||| || |||||||| ||||| | |||| || | | | || ||||| Sbjct 2484 CGTTTGGTCAACAGTGAACTGGATGGCAT---CGGCCTTGGGACGAGTGCGCAAGTAGTA 2428 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| ||||| || || ||||||| ||| |||| | |||||| || | || || | Sbjct 2427 CATACCGGTTTTAAGACCCTTCTTCCAGGCGTAAAAGTGCATTGAGGTCAACTTTCCGGT 2368 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 | |||| |||| ||||| | ||||| | || |||||||||||||| | | || || Sbjct 2367 GGAGGGGGCGGCGATGTGCACGTTCAAACTTTGACTTTGGTCGATGAATGCACCACGGTC 2308 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 ||||||||| | | || ||||| || || ||||| || |||||| ||| ||| | Sbjct 2307 TGCGGCCATGGTAAGGATAGTCTTTTGGCTGATTTCCCAGACGGTCTTGTACAGATCTTT 2248 Query 204073 GGTGTG-TTG---AGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGT 204127 | || ||| |||| | | |||| ||| | || || ||||| || | | Sbjct 2247 GTACTGCTTGGGAAGGCCCTT-----AACGTTTTGAACAGATCCTCCATCGGCAATGA-T 2194 Query 204128 CTCATCCTCGTCTCCT-CCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 || | | | | ||| ||| |||| ||||| || |||| || ||| Sbjct 2193 CTGGTTGCGCACGCTTGGGGTCCAGATGTTCAACGCGATCAAGTCACGCAACAAGTGCTT 2134 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||||| | | ||| ||||| | ||||| | || | || ||| |||| | ||| |||| Sbjct 2133 GTTGACGCACGTAAACTCTCCTGCAAGCACACGTCTGTTGTACATGTTGGTCGTGTATGG 2074 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 |||||| |||||||| || | ||| || | ||| |||||| ||||| || || | Sbjct 2073 TTCGAAGCATTCGTTGTTTCCCATAATTTGTGAGGTCGAGGCCGTCGGCATTGGCGCGAC 2014 Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGT 204365 ||||| |||||||| || |||| || ||| | |||| || | |||||| Sbjct 2013 GAGCAACGAGTTGCGTACGCCGTGCTTGGCGACATTGGCGC-GAAGTTCCGCCCAGTC-- 1957 Query 204366 GCATCG--CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 ||||| | | || | ||| ||||||||| || |||||||||| |||||| Sbjct 1956 CCATCGGTCCGTTGGGGTAACGTTCCACATGTCCGGTTGGAAGATGCCTTTGGAGACTGG 1897 Query 204424 GCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA 204482 | ||| ||| ||| || | | || | ||| ||| || ||| || |||| || Sbjct 1896 ACAGCCTGGGTAGGTCTCGTAGTGTCCGAAGC-GTTCGGCCTCCTCGCAAGACGCGGTCA 1838 Query 204483 TGGCGTGATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||||| || || |||| Sbjct 1837 TCGCGGCGAAGTACATGGTTTCGAATATCT 1808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795084749249280