Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6148 150 4e-31 seq4042 122 2e-22 seq2749 114 3e-20 seq6558 111 4e-19 seq229 105 2e-17 seq1888 86.0 1e-11 >seq6148 Length=2258 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || | |||||||||| |||||||||| ||| || Sbjct 1124 CGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTG 1183 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| ||||| || || || || || ||| Sbjct 1184 CGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCT 1243 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| ||| ||||| |||||| ||| ||| ||||| | Sbjct 1244 TCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGG 1303 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| ||||| || || |||||||| Sbjct 1304 GTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTG 1341 >seq4042 Length=4160 Score = 122 bits (134), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| |||||||| | | || | ||| || |||| ||||||||| |||| || Sbjct 2617 CGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTT 2558 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| ||||| ||||| |||||||| || ||||| ||| ||| Sbjct 2557 CGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCT 2498 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||| ||||||||||| |||| ||||| | | ||| || || | Sbjct 2497 TCCTTGTCCTGGATCATTTGCTTCACGTTCTCGATCGTGTCGCTCGGTTCGACGTCAAGG 2438 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||| |||| ||||| ||| | ||||| ||||| Sbjct 2437 GTAATCCTCTT-CCCGT--AAGTCTCTACAAACATTTG 2403 >seq2749 Length=6745 Score = 114 bits (126), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| ||||| | || || |||||||||| |||||| || | |||||| Sbjct 5261 CGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTA 5202 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| |||||||| || || ||||| ||||| || || ||| Sbjct 5201 CGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCT 5142 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCA 199586 ||| ||||| || ||| ||| ||| ||| || ||||| | | || || | || Sbjct 5141 TCTTTGTCCTGGATTTTTCCCTTGACG--TTCATGATCGTGTCGCTAGGCTCCACGTACA 5084 Query 199587 ACGTGATCGTCTTACCCGT 199605 | || ||||||||||| || Sbjct 5083 AAGTAATCGTCTTACCGGT 5065 >seq6558 Length=25225 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || | |||||| || | ||||||||| | | || | || || Sbjct 2738 AGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCC 2679 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || || || | || || ||||| || || ||||| ||| Sbjct 2678 TCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCC 2619 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||||||||| ||| || | |||||| | | || || ||||| || |||||| Sbjct 2618 TGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTC 2559 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | ||||||||||| || || Sbjct 2558 TTCCCCGTCAACGTTTTCACAAATATCTG 2530 >seq229 Length=1895 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 || || || ||||||||||| || | | || |||||||||||||| ||||||||| Sbjct 872 TCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAG 813 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || ||||| | ||| | | |||||| |||||||||||| |||| ||| Sbjct 812 ATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTTC 753 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 ||| ||||| | | || || ||||| || ||||||||||| || || || || || Sbjct 752 ACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACG 693 Query 199619 AAAATTTG 199626 |||||||| Sbjct 692 AAAATTTG 685 >seq1888 Length=501 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 199495 GAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCAC 199554 |||||| |||||||| || || || || ||||| ||||| ||||||||||| || Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 199555 GGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTT 199614 | |||| ||| || ||| || ||||| | |||||| || |||||||| | ||||| Sbjct 61 GTTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTT 120 Query 199615 CACAAAAATTTG 199626 || |||||||| Sbjct 121 TACGAAAATTTG 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178814536234896