Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2749 102 9e-17 seq6558 95.1 1e-14 seq6148 91.5 2e-13 seq229 84.2 2e-11 seq1888 82.4 9e-11 >seq2749 Length=6745 Score = 102 bits (112), Expect = 9e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || || ||||| || ||||||||||| ||||| ||||| | ||| || | Sbjct 5255 CGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCA 5196 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| ||||| ||||| | ||| | | || ||| Sbjct 5195 TCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTG 5136 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||| || ||||| || | ||||||||| | ||||| | || || || Sbjct 5135 TCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATC 5076 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAA 46584 || || || |||| || || || || Sbjct 5075 GTCTTACCGGTCAATGTCTTGACGAA 5050 >seq6558 Length=25225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || || || |||| || | ||| || || || || Sbjct 2718 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAA 2659 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||||| || | | ||||||||| ||||| | ||||| | Sbjct 2658 AATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTT 2599 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || |||| || || || || ||||||| |||||| || Sbjct 2598 CTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCAC 2539 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 2538 AAATATCTGCAT 2527 >seq6148 Length=2258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| | ||||| | || || | || || |||||||| Sbjct 1154 TCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAG 1213 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | | ||||||||| |||||| | ||||| | Sbjct 1214 ATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTT 1273 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||||||||| | || |||||||| ||||| || || || || Sbjct 1274 TCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACG 1333 Query 46583 AAGATTTGCATTTTG 46597 || |||||||| ||| Sbjct 1334 AAAATTTGCATCTTG 1348 >seq229 Length=1895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 46387 CAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAG 46446 |||||||| || || || || | ||||||||| || | ||| |||| || || Sbjct 888 CAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAG 829 Query 46447 CTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG-GCCGGCACGCTCTCCTTGTCCATGA 46505 |||||| |||||||| |||| ||||| | |||| | || || || |||||| | Sbjct 828 CTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCT-TCTTTGTCCTGAA 770 Query 46506 TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565 |||| ||||| || | | ||||||||||| ||||| |||| || || || || | Sbjct 769 TCTTTCGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTAC 710 Query 46566 CCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || || || ||||| || Sbjct 709 CGGTCAGGGTCTTTACGAAAATTTGTAT 682 >seq1888 Length=501 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 46493 TCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACC 46552 ||||||||| |||||| | ||||| || | | || || || | |||||||| | | Sbjct 35 TCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTATCACTTGGCTCCACATCGAGC 94 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||||||||| ||||||| |||||| || || |||||||| ||| Sbjct 95 GTGATGGTTTTACCCGTCAACGTTTTTACGAAAATTTGCATATTG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565188319877760