Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3919 196 5e-45 seq6148 140 3e-28 seq6558 132 5e-26 seq2749 100 3e-16 seq4042 82.4 8e-11 >seq3919 Length=4506 Score = 196 bits (216), Expect = 5e-45 Identities = 385/562 (69%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||| ||| |||||| || || || || |||||||||||||| | | ||||| ||||| Sbjct 1113 CTTGTACAGCAAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTT 1054 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 | ||| |||||||||||| | || || || || | ||| || | ||| | |||| Sbjct 1053 GGAGAAGCACAAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCA-CAAAACG 995 Query 133002 GCCCG-AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 |||| ||||||||| ||||||| || |||||||| || | | ||| | |||| | Sbjct 994 ACCCGGAAAAGAAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACG 935 Query 133061 CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG 133120 | | || | | | |||| || || ||| |||||||||| ||| || | || | Sbjct 934 CATTTTCGGCGTTGGTCCATCGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATG 876 Query 133121 TT-TCGATGGCGTTCAACAAACGGAG--TTTCTCTTCCGAGGAACGCACGTAGGTGTCGA 133177 || |||||||| |||| ||| | ||||| |||| | ||| ||||| | Sbjct 875 TTATCGATGGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTA--ATGTACGTGTCAA 818 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 | || || || | ||| | ||| | ||| || ||||| || || || ||||| |||| Sbjct 817 TAAGAAGAGAGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGC 758 Query 133238 ACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGA 133297 ||| ||||| || || ||||| | | ||| | | ||| || ||||| || | Sbjct 757 ACCTTGCCTCCGGCAGTTGGACTTCGTTCGAGAAGTTCATCAACAGGTTCTCGTTTACAA 698 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 ||||||| ||| |||||||||||||| |||| ||||||| || |||||||| Sbjct 697 TGCCGTCAGAGGCTGCGAAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCG 638 Query 133358 TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 ||| |||||||| |||| | | || ||||| ||| || | ||||| |||| Sbjct 637 TCATTTTATCCCAGTCTTTACTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACG 578 Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439 | || || |||||||||||||| Sbjct 577 AGGCTTCAGCTTTTTTGTACAT 556 >seq6148 Length=2258 Score = 140 bits (154), Expect = 3e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 ||| || |||||||| |||||||| || || ||||| |||||||| ||| |||| || || Sbjct 1351 TAACAAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGA 1292 Query 38297 GGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 | | |||| | | | ||||| | || |||| |||| ||||| || || || ||| Sbjct 1291 ACCAAGTGACACCATCGAAAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCC 1233 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | || ||||| || || || | ||| || ||||| |||| || | |||||| | | | Sbjct 1232 CTGATCAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTG 1173 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||||||||| || || || ||||| || ||| Sbjct 1172 ACTACAACATCCAAAAGGAAGCCACCCTTCACTTGGTTCTTCGT 1129 >seq6558 Length=25225 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 38233 TCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACG 38292 ||||| ||| ||||| ||||| || |||||| | ||||| || || || ||| | |||| Sbjct 2516 TCTTTCAAACCATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACG 2575 Query 38293 TCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATT 38351 ||||| || | |||| | | | |||| | || |||| || | ||||| || || || Sbjct 2576 TCGAGCCCTCGGACACCATTGAGAACG-TCAAGCAAAAGATTCAGGACAAGGAAGGGATC 2634 Query 38352 CCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 38411 ||| |||||||||| ||| | |||| ||||| |||||| |||| |||| || || ||| Sbjct 2635 CCCCCCGACCAACAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTC 2694 Query 38412 AACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||||||| || ||||| || || || || Sbjct 2695 TCCGACTACAACATTCAGAAGGAGGCCACCCTCCA 2729 >seq2749 Length=6745 Score = 100 bits (110), Expect = 3e-16 Identities = 138/187 (74%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 ||||||| || || | || || || || || || | |||| ||| | | ||||| || Sbjct 5048 TATTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACA-CG 5106 Query 38311 TGCA--AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGC 38367 || |||| | || | |||||||| |||||||| || || |||||| |||||||||| Sbjct 5107 ATCATGAACG-TCAAGGGAAAAATCCAGGACAAAGAAGGTAT-CCCGCCTGACCAACAGC 5164 Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427 | || |||| ||| ||||| |||||||| || | || || | ||| |||||||||| Sbjct 5165 GACTGATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCC 5224 Query 38428 AAAAGGA 38434 ||||||| Sbjct 5225 AAAAGGA 5231 >seq4042 Length=4160 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| || ||| | || | ||||| || | || ||| | |||||||| | | |||| Sbjct 2403 CAAATGTTTGTAGAGAC--TTACGGG-AAGAGGATTACCCTTGACGTCGAACCGAGCGAC 2459 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | |||| | || ||| |||| ||||| || || |||||| | || ||||| Sbjct 2460 ACGATCGAGAACG-TGAAGCAAATGATCCAGGACAAGGAAGGCATTCCCCCGGATCAACA 2518 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| || || | || || || |||||||| |||| || ||| | |||||||||||| Sbjct 2519 GCGTCTTATCTTTGCCGGGAAGCAGCTGGAAGACGGTCGAACCTTGGGCGACTACAACAT 2578 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || || ||| || || | || || || Sbjct 2579 CCAGAAAGAGGCCACGTTGAATCTTGTCCTTCG 2611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500128484689920