Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3621 340 2e-88 seq3536 134 2e-26 seq6482 89.7 7e-13 >seq3621 Length=4750 Score = 340 bits (376), Expect = 2e-88 Identities = 756/1125 (67%), Gaps = 12/1125 (1%) Strand=Plus/Minus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||||||||| ||||| || || ||||| || || || || || ||||| || | || || Sbjct 2240 GATGGCGGCCTGGACGGTGGCACCGTAGGCAACGGCTTCGTCCGGGTTGATGCTCTTGTT 2181 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | | || || ||||| || | | | ||| || || || ||||| || || || Sbjct 2180 CGGGTCCTTTCCGTTGAAGAAGGTCTTCAGCATGGACTGGATCTTTGGGATACGGGTGGA 2121 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 ||||| || | || ||||| | || || || ||||||| | |||||| | Sbjct 2120 CCCACCAACAAGTACTATTTCGTCGACCTTGTCCTTGGCGATCTTGGCGTCTCGCATGAC 2061 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 ||| ||||| || ||||| || ||||| ||||||| || || || ||||| || Sbjct 2060 TTTCTCGACGGGCTCCATGGTCTTGCGGAAGTAGTCCATGTTCATCTCTTCGAAACGGGC 2001 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| |||| | | ||| || | |||| || || || || ||||| ||| | Sbjct 2000 ACGGGTGATGGTGCTCTGGAAGTCGATCCCGTTGTGCAAGGAGTCGATTTCGATGTAGGC 1941 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 ||| | | || || || || ||||| || || || || | || || | || || || Sbjct 1940 TTGCGTGCTGGACGACAAGGTGCGCTTGGCACGTTCGCATGAAGTGCGAAGGCGGCGGAG 1881 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT- 7439 ||||||| ||| || | || ||| | || | ||||||| ||||| Sbjct 1880 GGCACGCTCGTTGGTGGCCAAGTCGACCTTGTTCCGGCGCCTGAACTCTTGCTTGAAGTA 1821 Query 7440 GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499 ||| | | || ||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 1820 GTCTACC-ATTCGGTTGTCGAAGTCTTCCCCTCCTAAGTGGGTATCTCCCGCGGTGGCCT 1762 Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 | ||||| |||||||| |||| ||| | | | || ||||| |||||||| ||||| | Sbjct 1761 TAACTTCGAAGATACCGTCTTCGATGGTAAGGAGGGACACATCGAACGTACCTCCACCAA 1702 Query 7560 GGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAG 7619 |||| || || | ||||||| | || || | || ||| || | |||||| || || | Sbjct 1701 GGTCGAAGATCAATACGTTCTTCTCCCCGCCCTT---CTTGTCCAAACCGTAGGCAATGG 1645 Query 7620 CCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 |||| || || || || || ||||||||||| ||||||||| ||||| | | || | Sbjct 1644 CCGCGGCGGTGGGCTCGTTGATAATACGAAGGACGTTCAGGCCGGCAATGGCCCCGGCGT 1585 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 | || || || || || || |||||||||||||||||||| || | || ||| | | Sbjct 1584 CCTTGGTGGCCTGGCGCTGACCGTCGTTAAAGTAGGCCGGGACGGTGATAACGGCG-CTG 1526 Query 7740 T-GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 | || | | ||||| | || || |||| | ||||| ||||| |||||||| | Sbjct 1525 TCTACGTCTTGGCCGAGGAAGGACTCTGCGACGTTCTTCATCTTGGTGAGAACCATGGCA 1466 Query 7799 GAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGT 7858 |||||||| || | || | || | ||| || || | | || ||||| || Sbjct 1465 CTGATCTCTTCGGCGCCGAAGTCCTTGGATTCGCCCTTGTAGTTGACGGAGATCATTGGC 1406 Query 7859 TTATCCG-CAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTG 7917 || |||| | || | ||||| | | ||| | ||||| || | || || | Sbjct 1405 TT-TCCGTTCGTGCCACTCTTGACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGTACATC 1347 Query 7918 TTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977 |||||||||| |||| ||||| | |||||| || || || | ||||| | ||||| Sbjct 1346 AGGGTCCGAAAAATTTCGGCCGATCAAACGCTTGGCGTCGAAGATGGTGTTGTGTGGGTT 1287 Query 7978 CATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGC 8037 ||||| |||||||| || |||| ||||||||||| || || || ||||| Sbjct 1286 CATGGAAACCTGGTTCTTGGCGGCGTTACCGATAAGACGCTC---GGAGTCGGTGAACGC 1230 Query 8038 GACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 ||||||||||| || || || | || |||||||| ||||| ||||| ||| | ||| Sbjct 1229 AACGTACGATGGTGTGGTGCGGGTACCCTGGTCGTTGGCAATGATTTCGACGGCATTGTT 1170 Query 8098 TTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 | ||| | || |||||||| || || || || | ||| ||||| Sbjct 1169 CTTCCACGCACCAACGCACGAGTAAGTGGTACCAAGATCGATACC 1125 >seq3536 Length=5038 Score = 134 bits (148), Expect = 2e-26 Identities = 251/361 (70%), Gaps = 11/361 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA-TAC 7514 ||| ||||| || || || ||||| || || ||||| || |||||||| | || | | | Sbjct 3483 ATCAAAATCCTCGCCCCCTAAGTGGGTGTCTCCCGCCGTGGCTTTGACATGGAACACTCC 3424 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | ||| ||| | | | || ||| ||||| || || || |||| ||||||| | | Sbjct 3423 CCCCTCCAAAGAGAGA-AGCGTAACGTCAAAGGTTCCCCCGCCCAAATCAAAAACCAAAA 3365 Query 7575 CGTT-CGTATC----GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 | || ||| | | || |||| | | |||| ||||||||||| || || ||||| Sbjct 3364 CATTGCGTTCCCCACGCCGATTTTGGACGT--CGAGCCCGTACGCGATCGCGGCGGCCGT 3307 Query 7630 TGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 || || || ||||| | || || ||| ||||||||||| | | || | ||||||| Sbjct 3306 GGGCTCGTTGATAATTCTCAG-CACTTCCAGGCCAGCAATTGCCCCGGCCGCCTTCGTCG 3248 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || || |||| |||||||||||| || || ||||| |||||||| | ||||| | Sbjct 3247 CGTGGCGCTGCGCATCGTTAAAGTACGCGGGAACCGTCACGACCGCTTTTGTGACCGGCC 3188 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 || | ||| ||| || || || ||||||||| | ||||| || || | ||||| Sbjct 3187 GCCCCAAGTACTTTTCGGCTATTTCCTTCATTTTGTACAACACCATGGACGAGACCTCTT 3128 Query 7809 C 7809 | Sbjct 3127 C 3127 >seq6482 Length=32563 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || |||||||| || || || ||||| |||||||| || ||||||||| Sbjct 7409 TCGAAATCTTCCCCTCCCAAGTGGGTGTCACCGGCGGTGGCTTTGACCTCGAAGATACCT 7468 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| || | || ||||| |||||||| || || ||||| || | ||| | | Sbjct 7469 TTCTCGATGGCCAAGATGGAGACATCGAACGTACCTCCTCCAAGGTCGAAGACGAGGATG 7528 Query 7577 TT 7578 || Sbjct 7529 TT 7530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635076527233920