Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3675 109 6e-19 >seq3675 Length=4586 Score = 109 bits (120), Expect = 6e-19 Identities = 292/435 (67%), Gaps = 26/435 (6%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || |||||||| ||||| ||||| |||||| ||||| | |||||||| | | || Sbjct 2432 TAGTACATACCGGTTTTAAGACCCTTCTTCCAGGCGTAAAAGTGCATTGAGGTCAACTTT 2373 Query 109474 -----GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACT--GATCGATGAA 109526 | | | | ||| | || || ||||| ||| |||| | |||||||| Sbjct 2372 CCGGTGGAGGGGGCGG-----CGATGTGCACGTTCAA--ACTTTGACTTTGGTCGATGAA 2320 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 | |||||| || || |||||| | |||| ||||||||| ||||||||||| ||||| Sbjct 2319 TGCACCACGGTCTGCGGCCATGGTAAGGATAGTCTTTTGGCTGATTTCCCAGACGGTCTT 2260 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTT 109646 ||||| || ||| | | ||||| | || | |||||||| ||| || ||| | Sbjct 2259 GTACAGATCTTTGTACTGCTTGGGAAGGCCCTTAACGTTTTGAACAGATCCTCCATCGG- 2201 Query 109647 CACCATGAGATCCTT---CATCTCTTTCGA-CCAGA-GACCGACCTTTTTGAGATCGTCA 109701 | |||| | || || | ||| | ||||| | | || | || || Sbjct 2200 --CAATGATCTGGTTGCGCA-CGCTTGGGGTCCAGATGTTCAACGCGATCAAGTCACGCA 2144 Query 109702 ACAAGATGCTTGTTGAC-CACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 ||||| ||||||||||| |||| ||| || || ||||| |||| | ||| ||||| Sbjct 2143 ACAAG-TGCTTGTTGACGCACG-TAAACTCTCCTGCAAGCACACGTCTGTTGTACATGTT 2086 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 |||||||| |||||||| || || ||||| || | ||||||| || || || || || Sbjct 2085 GGTCGTGTATGGTTCGAAGCATTCGTTGTTTCCCATAATTTGTGAGGTCGAGGCCGTCGG 2026 Query 109821 CATGGGAGCCATGAG 109835 ||| || || | ||| Sbjct 2025 CATTGGCGCGACGAG 2011 Score = 96.9 bits (106), Expect = 4e-15 Identities = 354/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Minus Query 110286 AGCA-ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344 |||| || ||||| | ||||| || | | ||||||| | | ||||| | | || | Sbjct 1561 AGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCT 1502 Query 110345 CCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 |||| |||||||| |||| ||||| |||||||| | ||| || |||| || Sbjct 1501 CCGTGCACAAGTT---ACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGT 1445 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG--AGAAT 110459 |||| | ||||| ||||||||||| || || || ||||| || |||||| || || Sbjct 1444 TGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTA-CT-TGACTTTCAAGGAT 1387 Query 110460 GGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 ||| | || |||| ||| || | | || || |||||||||| Sbjct 1386 TTTGAACCACAATTCCTGGGCGCGGATGGTCTTGAACCCTTTGCCCTCTGCCTCGTACTT 1327 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 || ||||||| || || |||| || | || || ||| || ||| Sbjct 1326 GGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCCACGTTGGG 1267 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 |||||| | || ||| | || | || || | ||||||||| ||||| || ||||| Sbjct 1266 ACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCA 1207 Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699 |||||| |||| ||||| ||| || || | || ||||| ||||| | || Sbjct 1206 CATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATC 1147 Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 ||| || || | | |||| |||||| || || || || | |||| || ||||| || Sbjct 1146 CAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCG 1087 Query 110760 ACGAC--CCGCC-TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAAT 110816 | ||||| |||| || || ||||| ||| | |||||||| | ||||| || || Sbjct 1086 CTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGAT 1027 Query 110817 AATTCC 110822 || || Sbjct 1026 GATGCC 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588923816726400