Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3675 174 2e-38 >seq3675 Length=4586 Score = 174 bits (192), Expect = 2e-38 Identities = 574/870 (66%), Gaps = 33/870 (4%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 ||||||| | | ||| || ||||| |||||||| || |||| ||| | ||||||| Sbjct 1570 ACTTTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACT 1511 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTGGTTAC 106568 | || || || |||||||| |||| ||||| || ||||| || | ||||| | Sbjct 1510 GGATGATCTCCGTGCACAAGTT---ACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGC 1454 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 | || |||||| | ||||||||||||||||| || || || || || || ||||| Sbjct 1453 TTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTA-CT-TGACT 1396 Query 106629 TG--AGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGT---CCCTC 106683 | || ||| ||||| || ||| | | ||| ||| || | ||||| Sbjct 1395 TTCAAGGATTTTGAACCACAATTCCTGGGCGCGGA---TGGTCTTGAACCCTTTGCCCTC 1339 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 ||||||||||| | ||| | || ||| |||||||| ||| | ||| || | Sbjct 1338 TGCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACG 1279 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 ||| || |||||||| | | ||| || || | || || |||||||||||||| Sbjct 1278 GGCCACGTTGGGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAG 1219 Query 106804 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 106863 |||||| ||||||| | | || || || | || || | |||||||| ||||| Sbjct 1218 GTCTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTT 1159 Query 106864 GAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 || | || || | |||||| | | ||||||||||| |||||||| || | |||| Sbjct 1158 -TTTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGA 1100 Query 106923 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 || ||||| || | || |||| | || || || || ||| |||| || |||| Sbjct 1099 ACGAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGC 1040 Query 106980 GAAGCATTGGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATT- 107037 | ||||| || || || || | || | | ||| || || |||||||| || | || Sbjct 1039 GCAGCATGGGGATGATGCCGT-TGCTGGAACCGTTGGTGCCCCGAAT-GTAGCTGCCTTG 982 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCA 107095 || | | | |||||| | || || ||||| || |||| ||| ||||| Sbjct 981 GGAGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGCA 922 Query 107096 -CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 ||| | ||| || | ||||| || | ||| ||| ||||| ||| | | ||| Sbjct 921 GGACTTC--AAG-GTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAA 865 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 ||| || | |||||| | ||| || || || ||||||||||| || || |||||| | Sbjct 864 GCACGAGGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGT 805 Query 107215 GAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 ||| ||| | | | |||| || ||| ||||| | | || ||||| | || Sbjct 804 GAA-GTACATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGT 746 Query 107274 GGATGCCGATGGCCACACGCATAAACATGT 107303 |||| ||||||| || ||||| | ||||| Sbjct 745 GGATACCGATGGAAACGCGCATGAGCATGT 716 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 ||||||||||| | ||||||||| || || | ||| || ||||| |||||| Sbjct 2138 TGCTTGTTGACGCACGTAAACTCTCCTGCAAGCACACGTCTGTTGTACATGTTGGTCGTG 2079 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || ||||| |||||||| || || |||| ||||||| ||| ||||| || |||||||| Sbjct 2078 TATGGTTCGAAGCATTCGTTGTTTCCCATAATTTGTGAGGTCGAGGCCGTCGGCATTGGC 2019 Query 106010 GC 106011 || Sbjct 2018 GC 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589928527701120