Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6558 156 9e-33 seq2749 145 2e-29 seq6148 141 2e-28 seq4042 132 1e-25 seq1992 132 1e-25 seq229 123 6e-23 seq1888 105 1e-17 >seq6558 Length=25225 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||| ||| || ||||| ||||| |||| || |||| || || || Sbjct 2735 ACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCC 2676 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || || || | ||||||||||| || || || ||||| ||||| ||| Sbjct 2675 AACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGA 2616 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||||||||||||||||||||||||||||| || || || | ||||| |||||| Sbjct 2615 ATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTC 2556 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | ||||| Sbjct 2555 CCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq2749 Length=6745 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || ||||| | ||||| || ||||| || |||||||||| | ||| | Sbjct 5259 GAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACG 5200 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || ||||| || ||||| |||||||| || || || ||||| Sbjct 5199 GCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTC 5140 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||| || |||||| |||||||||| || ||||| | ||||| | | || Sbjct 5139 TTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGT 5080 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||| || ||||| || || ||||| Sbjct 5079 AATCGTCTTACCGGTCAATGTCTTGACGAA 5050 >seq6148 Length=2258 Score = 141 bits (156), Expect = 2e-28 Identities = 162/214 (76%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| |||| || ||||| || ||||| || |||| || | ||||||| Sbjct 1135 AACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAG-GTGCGGCCATCTT 1193 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | || || || ||||||||||| |||||||| || || || || ||||| ||||| | Sbjct 1194 CCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCT 1253 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCG 195106 | || |||||||||||||| || |||||||| ||| |||||| || ||||||| | Sbjct 1254 GGATCTTTTGCTTGACGTTTTCGATGGTGTC---ACTTGGTTCCACATCGAGGGTAATGG 1310 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || | ||| |||||||| | |||||| Sbjct 1311 TTTTACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq4042 Length=4160 Score = 132 bits (146), Expect = 1e-25 Identities = 147/194 (76%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||| |||||| || || ||||| ||| | | |||| || ||||| |||||||| || Sbjct 2593 GTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACCGTCTTCCAGCTGCTTCCCG 2534 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| || ||||| || || ||||||||||| ||||| || || ||||||| Sbjct 2533 GCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTTC 2474 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 |||||||| || ||||| ||| || |||||||||| | || |||| || |||| Sbjct 2473 ACGTTCTCGATCGTGTCGCTCGGTTCGACGTCAAGGGTAATCCTC-TTCCCGT--AAGTC 2417 Query 195124 TTTACGAACACTTG 195137 | ||| |||| ||| Sbjct 2416 TCTACAAACATTTG 2403 >seq1992 Length=1353 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||| |||||| || ||||||||||| | || || | || ||||| | ||| || || Sbjct 885 GTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCC 944 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || ||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct 945 GCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTC 1004 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||||||| |||||||| || || || | ||| | ||||| || || | || Sbjct 1005 ACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTC 1064 Query 195124 TTTACGAACACTTGCAT--TTATGG 195146 || ||||| | |||||| |||||| Sbjct 1065 TTGACGAAAATTTGCATGGTTATGG 1089 >seq229 Length=1895 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 || || || |||| ||||| |||| ||||| ||| || ||| ||| ||||| ||| Sbjct 887 AGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGC 828 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| |||||||| || || |||| ||| | | | ||||||||||| ||||| Sbjct 827 TGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATC 768 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| ||||||||||| | || ||||| ||||| || | |||| |||||| || Sbjct 767 TTTCGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCG 708 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || |||||||| | ||| || Sbjct 707 GTCAGGGTCTTTACGAAAATTTGTAT 682 >seq1888 Length=501 Score = 105 bits (116), Expect = 1e-17 Identities = 107/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 195006 GAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 ||||||||| || ||||| || || || || ||||| ||||| || || ||||||||||| Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 195066 GTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| || |||| ||||| || || || | || || || ||||| || Sbjct 61 GTTCTCGATGGTATC---ACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGT 117 Query 195123 TTTTACGAACACTTGCAT 195140 ||||||||| | |||||| Sbjct 118 TTTTACGAAAATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109380842428496