Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6148 118 7e-22 seq6558 102 5e-17 >seq6148 Length=2258 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||||| ||| ||| || || ||||| ||||| | |||| | || |||| | Sbjct 1135 AACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGG-TGCGGCCATCTT 1193 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 ||| ||||||||||| || || || ||||| || || | || | || |||||||| Sbjct 1194 CCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCT 1253 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || |||||| | | || | |||| | || ||||||| ||| ||||||| Sbjct 1254 GGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTT 1313 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| |||||||| || || || ||||| || Sbjct 1314 TACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq6558 Length=25225 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || |||| | || |||| |||||| || ||||| Sbjct 2717 TCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAA 2658 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | ||| |||||||| |||||| || |||||| Sbjct 2657 ATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTC 2598 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | ||| || || || ||||| | || |||||| Sbjct 2597 TCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACA 2538 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2537 AATATCTGCAT 2527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324605556526464