Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1992 125 6e-24 seq6558 122 7e-23 seq4042 86.0 5e-12 >seq1992 Length=1353 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 ||||| |||||||||||||| | | || | | | || ||||| || || || ||||| Sbjct 891 TCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAA 950 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 ||||| |||||||||||||| || |||||||| || |||||||| ||||| || ||| | Sbjct 951 ATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTC 1010 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| || | || || || | || | || || ||||| | || || || Sbjct 1011 TCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACG 1070 Query 101459 AATATCTGCATGGTTACGCGAAGATTTGT 101487 || || |||||||||| | | | ||||| Sbjct 1071 AAAATTTGCATGGTTATGGCACGGTTTGT 1099 >seq6558 Length=25225 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| | || || || || ||||| |||| || |||| | | || ||||| || Sbjct 2729 TGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGT 2670 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| || ||||| ||||| || || ||||| || || ||||| ||| Sbjct 2669 TTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTT 2610 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || || || | || | ||| || || || Sbjct 2609 TGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTC 2550 Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||| |||||||||||||||||| Sbjct 2549 AACGTTTTCACAAATATCTGCATGGTT 2523 >seq4042 Length=4160 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 ||||| || || ||||| ||| | | |||| | || |||| ||||| || ||||| Sbjct 2587 TCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAAG 2528 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 || | |||||||||||| || ||||||||||| || || || || |||| || || | Sbjct 2527 ATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTTCACGTTC 2468 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| || ||| || ||||| || | | | || ||| |||| | |||| Sbjct 2467 TCGATCGTGTCGCTCGGTTCGACGTCAAGGGTAATCCTCTTCCCG---TAAGTCTCTACA 2411 Query 101459 AATATCTG 101466 || || || Sbjct 2410 AACATTTG 2403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396244167490416