Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1992 111 1e-19 seq4042 87.8 1e-12 seq229 82.4 6e-11 >seq1992 Length=1353 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | |||| |||||| || ||||||||||| || || | || Sbjct 864 AGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGG 923 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| || || ||||| |||| ||||||||||| | || | ||| ||| Sbjct 924 CCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCC 983 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||||| || ||| | | | || || | ||| || |||| || Sbjct 984 TTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTT 1043 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || || || | || || || ||||| ||||| || Sbjct 1044 ATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATGGT 1084 >seq4042 Length=4160 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 48569 CGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACC 48628 |||| |||||| || || ||||| || | ||||| |||| |||| |||||| || Sbjct 2594 CGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACCGTCTTCCAGCTGCTTCCC 2535 Query 48629 GGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTT 48688 |||||| || || ||||||||||||| ||||| ||| |||||||| ||| |||| || Sbjct 2534 GGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTT 2475 Query 48689 TAC 48691 || Sbjct 2474 CAC 2472 >seq229 Length=1895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| |||| || || | | || ||| |||||| ||||| |||| ||||| || Sbjct 910 CGCCTCCCCGAAGGCGGAGTAGCAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGC 851 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC--CGT 48655 || |||| |||| |||| |||||||||||| || ||||| ||||||| || | Sbjct 850 TCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTT 791 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 ||| | || || ||||| ||||||| | || || | | | || || ||| Sbjct 790 GGGTA--CCTTCTTTGTCCTGAATCTTTCGCTTGACGTTCACGATCGTGTCGCTCGGCTC 733 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||| |||||||| || || |||| || ||||| ||||| || || Sbjct 732 CACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACGAAAATTTGTAT 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380904692705424