Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3675 255 1e-62 seq3919 145 1e-29 >seq3675 Length=4586 Score = 255 bits (282), Expect = 1e-62 Identities = 878/1344 (65%), Gaps = 59/1344 (4%) Strand=Plus/Minus Query 212922 AAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCG 212981 || || |||| ||||| | || | ||| | ||| | ||||| || |||| || ||| Sbjct 2120 AACTCTCCTGCAAGCACACGTCTGTTGTACATGTTGGTCGTGTATGGTTCGAAGCATTCG 2061 Query 212982 TTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTC 213041 ||||| |||| ||| |||| || ||| || ||||| || || || || | ||| Sbjct 2060 TTGTTTCCCATAATTTGTGAGGTCGAGGCCGTCGGCATTGGCGCGACGAGCAACGAGTTG 2001 Query 213042 CTCACTCCGTGCTCGCCGATGA-GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 | || ||||||| | ||| ||||| |||| || ||||||||||||| | | | | Sbjct 2000 CGTACGCCGTGCTTGGCGACATTGGCGC-GAAGTTCCGCCCAGTCCCATCGGTCCGTTGG 1942 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 | | |||||||||||||| || |||||||||||| || || | ||| Sbjct 1941 GG---------TAACGTTCCACATGTCCGGTTGGAAGATGCCTTTGGAGACTGGACAGCC 1891 Query 213161 CTGGTAAGAGGAGTAGGGGCC-ATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAG 213219 |||| | |||| | || | || | |||| |||||| ||||| || || | Sbjct 1890 TGGGTAGGTCTCGTAGTGTCCGAAGCGT-TCGGCCTCCTCGCAAGACGCGGTCATCGCGG 1832 Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGA--CG--TG 213275 || |||| |||||||| ||||||||| |||| | | ||||||| | || || Sbjct 1831 CGAAGTACATGGTTTCGAATATCTCCTTGTTCAATTGTCGGGCCTCTTCGCTTTCGAATG 1772 Query 213276 --AAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGG 213333 ||| |||||| ||| ||| | || || ||||| ||||| || | || || | Sbjct 1771 GAAAGCGCATCAAAATG------AACGCGTCGGCAAGCCCTTGGACGCCCAGCCCAATTG 1718 Query 213334 GTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATG 213392 | | ||| | || || || | | |||| |||||||| ||||| ||||| ||||||| Sbjct 1717 GGCGGTGGCGCATATTGGAGTAGCGAGC-CTCCTCCACTGGGTAGTAGTTGACGTCGATG 1659 Query 213393 ATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC 213452 | ||| | |||| ||| | ||| |||| | ||| || ||| ||| || Sbjct 1658 ACACGGTTCAAGTTGACGGTCACGGTTTTAACAACATCGAACAGTGCCTTGTGGTTGTAC 1599 Query 213453 AC------GTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506 || || ||| | | | ||| |||| |||| | |||| |||| ||||||| Sbjct 1598 ACTGGCTTGTCGCCGCTGGTGTCCACGAACTTTGGCAAGCAGATGGACGCCAAGTTGCAA 1539 Query 213507 ACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566 ||||| | ||| | | | | ||||||| |||||||| ||||||| ||| || || Sbjct 1538 ACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTGCACAAGTTACTCGATTTA 1479 Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTA 213625 || || |||| ||| || ||||| | |||||| | ||| || ||||||||||||||||| Sbjct 1478 ATAGTTCCCAAGTTTTGCTGGTT-GCTTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTA 1420 Query 213626 GGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGAC 213685 || | ||||| |||| || | || || | | ||| | | ||||| | | Sbjct 1419 CGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTTGAACCACA-ATTCCTGGGC--GCG 1363 Query 213686 CACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTG 213745 | | ||| || | | |||||||||| |||| | | ||| || | Sbjct 1362 GATGGTCTTGAACCCTTTGCCCTCTGCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTC 1303 Query 213746 GCCCCAGACCCTGTCCAG--TCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803 ||||||| || ||| | | || || | | |||||| | | | |||| | |||| Sbjct 1302 GCCCCAGGTTTCGTGCAGGTTACGGGCCACGTT--GGGACAGAACAAGGTCCACTGCCCG 1245 Query 213804 TC-ATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCT 213862 || || | || | || |||||| ||||| |||| ||||| |||| ||||||||| | Sbjct 1244 TCGGACTGT-ACGCGCTTCATGAAAAGGTCTGGGATCCACATCGCGTAGAACAGGTCGCG 1186 Query 213863 GGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919 || | |||||| | || |||||| || ||| | || ||||| | ||| Sbjct 1185 GGCGCGGGCGTTCTCGT---CACCGTGGTTTTTCTTCAAATCCAAGAACTCAAAAACGTC 1129 Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTC 213976 ||||||||||||||| | ||| ||||| || | |||| | |||| ||||| ||||| Sbjct 1128 CGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCTTGGTC 1069 Query 213977 CACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG--T 214034 || || || |||||||| |||||| | ||| | | |||||| ||| Sbjct 1068 GACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATGATGCCGTTG--CTGGAA 1011 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATG 214094 |||||||| ||| || || ||| || | | | | ||||| || || ||| Sbjct 1010 CCGTTGGTGCCCCGAATGTAGCTGCCTTGGGAGCGAATGCCGTGGATGGATAGACCGATG 951 Query 214095 CCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATG 214154 || |||||||||||| ||| ||||||| | ||| || || ||| || | ||| Sbjct 950 CCCCCGGCGTACTTGCTGATGCAGGCGCAGGACTTCAAGGTGTCGTAGATCCCTTCGATG 891 Query 214155 CTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTG-GGGCCTGGACGAGCCAGA 214213 ||||| || | | | ||||||||||||| | |||||| |||| ||| | || | Sbjct 890 CTGTCGTCCTTCATGGTCAGCAAGAAGCACGAGGCGAGCTGCGGGCGTGG-GGTCCCGGC 832 Query 214214 GTTGAAAAGCGTGGGGCTGGCATG 214237 |||||| || || || |||| || Sbjct 831 GTTGAAGAGGGTCGGCGTGGCGTG 808 >seq3919 Length=4506 Score = 145 bits (160), Expect = 1e-29 Identities = 547/846 (65%), Gaps = 24/846 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | |||||||| || || ||||| || | || ||| || | ||||| Sbjct 1389 GTACTCACCTACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCAT 1330 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 | || || |||| || ||| |||| | | | |||| ||| || | Sbjct 1329 CCAATCAAACGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCG 1270 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || ||| |||||||||||||| |||| | |||| ||||| ||||| | ||| Sbjct 1269 GTCTGCGCAGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCAC 1210 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||||| || || | | || | || || || | ||| || | ||| | || | | Sbjct 1209 GGGCAATGCTTTGGACACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATATCGTG 1150 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTG---CTTGGCATAGAGCATGCAGGCAAA 48138 || ||| | | | |||| || || ||| |||| || |||| ||| || || Sbjct 1149 AATGCGTTGTTGAGGGAGTTTATTTATCAAGTGGTCCTTG---TACAGCAAGCACGCGAA 1093 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 || | ||||||||| ||||| |||||||||||| ||||||||||||| | || ||||| Sbjct 1092 ATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCAT 1033 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | |||| || || | |||||| | || || || || || |||||||||||||| Sbjct 1032 CAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTC 973 Query 48259 -CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 ||| || ||||| || | ||| || | || || || || | | | | |||| Sbjct 972 GCAC-GCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTTCGGCGTTGGTCCATC 914 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC-ATCGTCTCTATGGC---CCGGAAG 48373 ||| ||| || ||||| || | |||| | || | || ||||| | | || Sbjct 913 GAAGGCACCAATCGGCCTT-TTGGCGGACCATGTCAATGTTATCGATGGCATTCAGCAAC 855 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 | ||| || | | | || || || | | || || | ||| | Sbjct 854 CTATCCTT---TTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAG---AGAGTATACT 801 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || | ||| | || || || || |||||||||||||||||| ||| ||||| || Sbjct 800 TCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGT 741 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || ||||| | ||||| || || ||| ||||| || || || || || || || || Sbjct 740 TGGACTTCGTTCGAGAAGTTCATCAACAGGTTCTCGTTTACAATGCCGTCAGAGGCTGCG 681 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 || ||||| ||||| | | | ||| || ||||||| || | || |||| | Sbjct 680 AAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAG-TC 622 Query 48611 TGTAC-GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | ||| ||||| ||| ||||| |||||| |||||||||| || || |||||||| Sbjct 621 TTTACTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTTT 562 Query 48670 GTACAT 48675 |||||| Sbjct 561 GTACAT 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931450266193920