Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3919 181 2e-40 seq3675 145 1e-29 >seq3919 Length=4506 Score = 181 bits (200), Expect = 2e-40 Identities = 440/659 (67%), Gaps = 12/659 (2%) Strand=Plus/Plus Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAG 25527 ||||| ||||| ||| | |||||||| || ||| || ||| |||||| || |||||| Sbjct 538 CACAACGATATTTGGCAAATGTACAAAAAAGCTGAAGCCTCGTTCTGGACTGCGGAAGAG 597 Query 25528 ATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTT 25587 | || |||| | |||| | | |||| | | | | |||| | | || Sbjct 598 CTGGACTTGGCACAAGACAGTAAAGACTGGGATAAAATGACGGACAACGAACGGTTCTTC 657 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||| |||| |||| || || ||||||||||| || || || |||||||| |||| Sbjct 658 ATCAGCAACGTCCTGGCCTTTTTCGCAGCCTCTGACGGCATTGTAAACGAGAACCTGTTG 717 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 || ||| | | ||||| || |||||| | ||| |||||||| |||||||| Sbjct 718 ATGAACTTCTCGAACGAAGTCCAACTGCCGGAGGCAAGGTGCTTCTACGGGTTCCAGATA 777 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 ||||| ||||| | ||| | || || || | ||||| || |||||||||| | Sbjct 778 GCCATTGAAAACATCCACGCAGAAGTATACTCT---CTTCTTATTGACACGTACATTAAA 834 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 | | || | ||| || || | ||||||||| |||| || || Sbjct 835 AATGGAAAAGAAAAGGATAGGTTGCTGAATGCCATCGATAACATTGACATGGTCCGCCAA 894 Query 25825 AAGGCGCGGTGG-GCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 ||||| ||| ||| | | |||| |||| | | | || |||||| ||| || | Sbjct 895 AAGGCCGATTGGTGCCTTCGA-TGGACCAACGCCGAAAATGCGTCGTTTGCCGAAAGGGT 953 Query 25884 GGTAGCCTTTGCTGCTGTG-GAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 ||||| || || || ||| ||||||||||| || ||| |||||| ||| | |||| Sbjct 954 TGTAGCTTTCGCCGC-GTGCGAGGGCATCTTCTTTTCCGGGTCGTTTTGTGCCGTGTTCT 1012 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 || | ||| || ||| |||||||| ||| ||| |||||||||||||||||| | | Sbjct 1013 GGTTAAAGAAGCGGGGTTTGATGCCCGGCTTGTGCTTCTCCAACGAGCTCATCAGCCGCG 1072 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 ||||||| | ||| | ||||| || ||| |||| |||| || ||||||| | | |||| Sbjct 1073 ACGAGGGCTTGCACTGTGATTTCGCGTGCTTGCTGTACAAGGACCACTTGATAAATAAAC 1132 Query 26063 CTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 ||||| | | | || ||||||| | |||||||| ||||| || ||||| Sbjct 1133 TCCCTCAACAACGCATTCACGATATCATCGGGAACGCTGTGGACATCGAAAA--AGTTT 1189 >seq3675 Length=4586 Score = 145 bits (160), Expect = 1e-29 Identities = 595/921 (65%), Gaps = 39/921 (4%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTG 221430 ||| | ||||||| | ||| | ||||||||| |||||||| |||| || ||| Sbjct 1887 GTAGGTCTCGTAGTGTCCGAAGCGTTCGGCCTCCTCGCAAGACGCGGTCATCGCGGCGAA 1828 Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCAT 221490 ||| ||||| || || ||| |||||| | | |||||| ||| || | Sbjct 1827 GTACATGGTTTCGAATATCTCCTTGTTCAATTGTCGGGCCTCTTCGCTTTCGAATGGAAA 1768 Query 221491 ACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 |||| || |||| | ||||||| || || || || || | || || || | ||| | Sbjct 1767 GCGCATCAAAATGAACG-CGTCGGCAAGCCCTTGGACGCCCAGCCCAATTGGGCGGTGGC 1709 Query 221550 TCCTGTTGGA--AGCG-GCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 | | ||||| |||| ||| | || ||| || || ||||||||||||| | | || Sbjct 1708 GCATATTGGAGTAGCGAGCCTCCTC---CACTGGGTAGTAGTTGACGTCGATGACACGGT 1652 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACT 221666 | | ||| | || | | |||||| || ||| ||| || ||| ||| |||| || Sbjct 1651 TCAAGTTGACGGTCACGGTTTTAACAACATCGAACAGTGCCTTGTGGTTGTACACTGGCT 1592 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC--GCTGG---CCAGGTT 221721 | ||||| ||| | ||||| || ||| ||||| | ||| ||| ||| Sbjct 1591 TGTCGCCGC--TGGTG----TCCACGAAC---TTT--GGCAAGCAGATGGACGCCAAGTT 1543 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 || ||||| | ||||||| | || ||||| |||||||| || || | ||| || | Sbjct 1542 GCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTGCACAAGTTACTCGA 1483 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 || || || |||| || | || || ||||| ||| || ||||||||||||||| Sbjct 1482 TTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGAGTCCTTGTAGAGCAT 1423 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCT 221901 | || || || || | ||| | || || ||| ||| | ||| ||||| Sbjct 1422 GTACGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTTGAACCACAATTCCTGGGCGCG 1363 Query 221902 CACCGTCCTCTTGA---CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAA 221958 | ||| |||| || ||||| | || | ||| || || | | || || Sbjct 1362 GATGGTC---TTGAACCCTTTGCCCTCTGCCT---CGTACTTGGCGTACAAGGTTTCGAA 1309 Query 221959 CTTTTCACCGTACGCCTCGTCCAGGC--CTGGACACCTGGCGGGACACATCAGACTCCAG 222016 || || || | | |||| |||| | || ||| | | ||||| | || |||| Sbjct 1308 CTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCCACGTTG--GGACAGAACAAGGTCCAC 1251 Query 222017 TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGA 222076 ||| || | | || | || |||||| ||||| |||||||||| ||| | || || Sbjct 1250 TGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCACATCGCGTAGAACAGG 1191 Query 222077 TCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATG 222136 || | || || | ||| | |||| ||||||| ||| |||||| |||||||||| | Sbjct 1190 TCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATCCAAGAACTCAAAAACG 1131 Query 222137 TCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGA 222196 || |||||||||||||| || || | ||| | | ||| |||||| || || || Sbjct 1130 TCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCTTGG 1071 Query 222197 TCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCG 222255 || | | | | | | | | ||||||||| ||| || | || | | |||||| Sbjct 1070 TCGA-CGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGCTGGA 1012 Query 222256 ACCGTTGGTGCCCTTAATGTA 222276 ||||||||||||| |||||| Sbjct 1011 ACCGTTGGTGCCCCGAATGTA 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928762504350720