Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6148 132 3e-25 seq3901 102 5e-16 seq1992 102 5e-16 >seq6148 Length=2258 Score = 132 bits (146), Expect = 3e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTA-CTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||||||||| || || | ||||| || ||| |||| | | || || ||| | | Sbjct 1123 ACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATG-TTGTAGTCACTCAAGG 1181 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | |||||| | ||| ||||| || || |||||||||||||||||||| || || | Sbjct 1182 TGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATAC 1241 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||||||||| || |||||||| ||||| ||| || || ||| | || || | Sbjct 1242 CTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGA 1301 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| |||||||| || |||||||| ||||||||||| Sbjct 1302 GGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTG 1341 >seq3901 Length=887 Score = 102 bits (112), Expect = 5e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| | ||||| |||||||| || || || ||||||||||| || ||||| Sbjct 541 CTTCCCAGCAAAGAAAAGACACTGTTGATCGGGGGGGATACCTTCCTTGTCCTGGATCTT 600 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||| || | | |||||||| ||| | || || ||||||||||| || ||||| || Sbjct 601 TTGCTTCATGGTCTCAATAGTGTCACTCGGTTCAGCATCAAGGGTAATTGTCTTACCAGT 660 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 | | ||| |||||||| || Sbjct 661 CAAACCCTTCACGAAAATCTG 681 >seq1992 Length=1353 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | || || || |||||||| | || |||||||| ||||| || ||||||||| Sbjct 927 TCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTG 986 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAAT 480736 |||||||||||||| || ||| ||||| || || | | | | | | ||| ||| || Sbjct 987 TCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAA-GGTTAT 1045 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||||||||| Sbjct 1046 GGTCTTCCCGGTAAGGGTCTTGACGAAAATTTG 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267875161289024