Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3675 138 1e-27 >seq3675 Length=4586 Score = 138 bits (152), Expect = 1e-27 Identities = 569/874 (65%), Gaps = 25/874 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | ||||| |||||| | ||||| || | Sbjct 708 CCCGCAGCACATGCTCATGCGCGTTTCCATCGGTATCCACAAAGCGGACATCGAGCGAGC 767 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || |||| | | | ||| |||| |||||| || || ||||||| Sbjct 768 GATCGAGACCTACAACTTGATGAGCAACATGTAC-TTCACTCACGCCACGCCGACCCTCT 826 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || ||| | |||||| | || |||||| | | ||| ||||| | Sbjct 827 TCAACGCCGGGACCCCACGCCCGCAGCTCGCCTCGTGCTTCTTGCTGACCATGAAGGACG 886 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG-TGCGCAAATCTCA--AAGTGGG 75446 || ||| | || ||||| | || ||| | ||| ||||| ||| |||| | Sbjct 887 ACAGCATCGAAGGGATCTACGACAC-CTT--GAAGTCCTGCGCCTGCATCAGCAAGTACG 943 Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC-AATAAATCTCGTATTCGGGGG 75505 | ||||| || || | |||||| | | | || || | || |||||||| Sbjct 944 CCGGGGGCATCGGTCTATCCATCCACGGCATTCGCTCCCAAGGCAGCTAC-ATTCGGGGC 1002 Query 75506 ACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 || || ||| | | || | || || || || ||||| ||||| || |||| ||| || || Sbjct 1003 ACCAACGGTTCCAGCA-ACGGCATCATCCCCATGCTGCGCGTCTTCAACGACACCGCACG 1061 Query 75565 CTATGTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 || || | |||| ||| ||| |||||||| || |||| | ||| | || || || Sbjct 1062 GTACGTCGACCAAGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATGTACCTTGAGCCGTG 1121 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTC 75680 ||| || || | | |||||| | || || | || ||||| |||||||| | || | Sbjct 1122 GCACGCGGACGTTTTTGAGTTCTTGGATTTGAAGAAA-AACCACGGTGACGAGAACGCCC 1180 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | || || || | | ||||||| |||||||||||||||||||| || || Sbjct 1181 GCGCCCGCGACCTGTTCTACGCGATGTGGATCCCAGACCTTTTCATGAAGCGCGTACAGT 1240 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 | || || ||| | | |||||||| || ||| | || ||| | || Sbjct 1241 CCGACGGGCAGTGGACCTTGTTCTGTCCCAACGTGGCCCGTAACCTGCACGAAACCTGGG 1300 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAG---CCAATGCGA 75857 | |||||||| ||| || | ||| | ||||| || | ||||| | || ||| || Sbjct 1301 GCGAGGAGTTCGAAACCTTGTACGCCAAGTACGAGGCAGAGGGCAAAGGGTTCAA---GA 1357 Query 75858 CTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 | | | ||| || | ||| || || || || || || ||||||| Sbjct 1358 CCATCCGCGCCCAGGAATTGTGGTTCAAAATCCTTGAAAGTCAAGTAGAAACCGGAACAC 1417 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | || ||||| |||||||| |||| ||| || || ||||| | || |||||||| | Sbjct 1418 CGTACATGCTCTACAAGGACTCTTGCAACCGCAAAAGCAACCAGCAAAACTTGGGAACTA 1477 Query 75978 TCAAGAGCTCAAATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 | || | | | ||| |||||||| || | ||||||| | ||| |||| || Sbjct 1478 TTAA-ATCGAGTAACTTGTGCACGGAGATCATCCAGTACACTGCCCCGGACGAGATTGCC 1536 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 |||||||| ||||| || ||| | | ||||||| Sbjct 1537 GTTTGCAACTTGGCGTCCATCTGCTTGCCAAAGT 1570 Score = 91.5 bits (100), Expect = 2e-13 Identities = 281/423 (66%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || |||||||| || ||||| ||| ||||||| |||| || || |||||||| |||||| Sbjct 2017 GCGCCAATGCCGACGGCCTCGACCTCACAAATTATGGGAAACAACGAATGCTTCGAACCA 2076 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 ||||| || ||||| ||| ||| | || ||||| |||||| ||||||||| Sbjct 2077 TACACGACCAACATGTACAACAGACGTGTGCTTGCAGGAGAGTTTACGTGCGTCAACAAG 2136 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTC-TCTGG--TCCAAGGATATG-AAGGATCT 76686 ||| | | |||| | | | ||| | ||||| ||||| | | || | | Sbjct 2137 CACTTGTTGCGTGACTTGATCGCG-TTGAACATCTGGACCCCAAGCGTGCGCAACCAGAT 2195 Query 76687 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCA--GATATCCCAGATGATATCAAG 76744 ||| | | || || || ||||||| | | | | ||||| | | ||| Sbjct 2196 CATTG---CCGATGGAGGATCTGTTCAAAACGT-TAAGGGCCTTCCCA-AGCAGTACAAA 2250 Query 76745 AATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA-TGTCATTGACATGGCCGCAGA 76803 |||| ||| || || ||||||||| || ||||| | || || |||||||||||| Sbjct 2251 GATCTGTACAAGACCGTCTGGGAAATC-AGCCAAAAGACTATCCTTACCATGGCCGCAGA 2309 Query 76804 TCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGAT 76863 |||||| ||||| || |||||||||||| |||| | ||| | || | | Sbjct 2310 CCGTGGTGCATTCATCGACCAAAGTCAAAGTTTGAACGTGCACATCGCCGCCCCCTCCAC 2369 Query 76864 GTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923 ||| | | || ||||| | ||||| ||||| |||| || |||||||| ||||| Sbjct 2370 CGGAAAGTTGACCTCAATGCACTTTTACGCCTGGAAGAAGGGTCTTAAAACCGGTATGTA 2429 Query 76924 CTA 76926 ||| Sbjct 2430 CTA 2432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596516743933440