Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6148 84.2 4e-11 >seq6148 Length=2258 Score = 84.2 bits (92), Expect = 4e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || || || | || || || || ||| || || ||| Sbjct 1118 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTC 1177 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| ||||||||||| || || ||||| | | ||||||||||| || Sbjct 1178 AAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGG 1237 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || | || || || || | || | ||| || Sbjct 1238 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACA 1297 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAA 192548 || || |||||||||||||| || | || || | || || ||||| || ||| |||| Sbjct 1298 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTTGTTATAAAA 1356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984390594448800