Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6148 136 4e-27 seq1992 113 4e-20 seq4042 93.3 4e-14 seq2749 87.8 2e-12 seq1888 84.2 2e-11 seq229 84.2 2e-11 >seq6148 Length=2258 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | || || || || |||||||| ||||| ||||| || ||| | | Sbjct 1345 GATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCAAG 1286 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||||||||| ||||| ||||| || || || ||||| Sbjct 1285 TGACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCA 1226 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | ||||| ||||| ||||| |||| ||| | | | || || || || Sbjct 1225 ACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTACAA 1166 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||||||| | || || |||||||| Sbjct 1165 CATCCAAAAGGAAGCCACCCTTCACTTGGT 1136 >seq1992 Length=1353 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || | || || || ||||| || || || || | || || || || Sbjct 1084 ACCATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCC 1025 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| |||||||| ||||| || ||||||||| Sbjct 1024 TCGGACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGAT 965 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| || ||||| ||||| ||||||||| |||| || | | |||| ||||| Sbjct 964 CAACAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTAC 905 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || | || | ||||||||| | || | ||||| || Sbjct 904 AATATACAGAAAGAGGCCACGTTGCACTTGGTGCTTCGCCTTCGCGGGGG 855 >seq4042 Length=4160 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 ||||| || || || ||| | | |||||| | || | || || |||| |||||| ||| Sbjct 2433 ATTACCCTTGACGTCGAACCGAGCGACACGATCGAGAACGTGAAGCAAATGATCCAGGAC 2492 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||||| || || || |||||||| ||| | |||||||||||||| |||||||| || Sbjct 2493 AAGGAAGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGGAAGCAGCTGGAAGA 2551 >seq2749 Length=6745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGT-AGAAACGGTAAAACA 24786 |||||||| || ||||| | | || || | | |||||| | | |||| || | Sbjct 5065 ACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGATCATGAACGTCAAGGGA 5124 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||| ||||| ||||||||||| || || || || ||||| || |||| || ||||| || Sbjct 5125 AAA-ATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGACTGATTTTCGCCGGCAA 5183 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 |||||||| ||| | | |||| ||||| ||||| |||||||| || || | || Sbjct 5184 GCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAAAAGGATTCCACCTTGCA 5243 Query 24907 CTTGGTGTTGCG 24918 | | || ||||| Sbjct 5244 CCTAGTCTTGCG 5255 >seq1888 Length=501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | |||||| | || |||||||| || |||||||| || || | | Sbjct 135 ATGCAAATTTTCGTAAAAACGTTGACGGGTAAAACCATCACGCTCGATGTGGAGCCAAGT 76 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||| ||||| ||||| || || || |||||| Sbjct 75 GATACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCAA 16 Query 24824 CAACGTTTGATCTT 24837 || ||| | ||||| Sbjct 15 CAGCGTCTTATCTT 2 >seq229 Length=1895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || |||||||| || ||||| | || || || | | |||||| | | | Sbjct 697 AAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAGCGACACGATCGTGAAC 756 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || | |||||| || ||||||||||| | | | ||| |||| || ||||||| Sbjct 757 GTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAAACAGCGGCTGATCTTC 816 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || |||||||| || | ||||| || || || ||| |||| || ||| | Sbjct 817 GCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTACAACGTTCAGAAAGAAGCC 876 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCAACG 24946 || || || || | | || | || ||||||||| ||| ||||| Sbjct 877 ACGCTGCATCTGCTACTCCGCCTTCGGGGAGGCGGA--GGAGGCAACG 922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449857739072640