Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3675 125 1e-22 seq3919 89.7 8e-12 >seq3675 Length=4586 Score = 125 bits (138), Expect = 1e-22 Identities = 188/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || || || |||||||| |||||||| |||||||| | | ||||||| | Sbjct 1073 TGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATGATGCCGTTG--C 1016 Query 2073601 TCG--CCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGC 2073658 | | |||||||||||| | |||| ||| || ||| | ||| || | | Sbjct 1015 TGGAACCGTTGGTGCCCCGAATGTAGCTGCCTTGGGAGCGAATGCCGTGGATGGATAGAC 956 Query 2073659 CGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCT 2073718 ||||||| ||||| |||| |||| ||||| |||| || |||||||| || | Sbjct 955 CGATGCCCCCGGCGTACTTGCTGATGCAGGCGCAGGACTTCAAGGTGTCGTAGATCCCTT 896 Query 2073719 CGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGC 2073778 |||| |||| |||||||| || || |||||||| | | |||||||| | || | Sbjct 895 CGATGCTGTCGTCCTTCATGGTCAGCAAGAAGCACGAGGCGAGCTGCGGGCGTGGGGTCC 836 Query 2073779 CGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||| |||||||| || ||||| || Sbjct 835 CGGCGTTGAAGAGGGTCGGCGTGGC 811 >seq3919 Length=4506 Score = 89.7 bits (98), Expect = 8e-12 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || ||||| ||||| || | |||||| || ||| |||| ||||||||| Sbjct 761 AAGCACCTTGCCTCCGGCAGTTGGACTTCGTTCGAGAAGTTCATCAACAGGTTCTCGTTT 702 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || |||||||| ||| ||||||||||| ||||||| |||| ||| || |||| | Sbjct 701 ACAATGCCGTCAGAGGCTGCGAAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTG 642 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || | | |||||| |||| | ||| | ||| | ||| || || ||||| Sbjct 641 TCCGTCATTTTATCCCAGTCTTTACTGTCTTGTGCC-AAGTCCAGCTCTTCCGCAGTCCA 583 Query 796320 AAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT-CCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || || ||||||||||| | ||| || |||| || |||| ||||||| Sbjct 582 GAACGAGGCTTCAGCTTTTTTGTACATTTGCCAAATATCGTT-GTGCTGGATCGGGAACA 524 Query 796379 GAACAAAGCGATTGGGGTTCTC 796400 ||| || || || ||||| || Sbjct 523 AAACGAATCGTTTCGGGTTTTC 502 Score = 86.0 bits (94), Expect = 1e-10 Identities = 223/331 (67%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| | |||||| ||||| | ||||||||| | || |||||| Sbjct 1079 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACCCCGCTTC 1020 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA-AAGATGCCCTCGACGGCGGCAAA 794459 || | ||| || | |||||| |||| |||| ||| |||||||||||| ||||| || Sbjct 1019 TTTAACCAGAACACGGCACA-AAACGACCCGGAAAAGAAGATGCCCTCGCACGCGGCGAA 961 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC--CCTCTTTGTTGATCCACTTCATCGC- 794516 | || | || |||||||| | | || || |||| |||| | | || Sbjct 960 AGCTACAACCCTTTCGGCAAA-----CGACGCATTTTCGGCGTTGGTCCA-TCGAAGGCA 907 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCG-TGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| || ||||||| | ||| | | || | | |||||||| | | |||| Sbjct 906 CCAATCGGCCTTTTGGCGGACC-ATGTCAATGTTATCGATGGCATTCAGCAACCTATCCT 848 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | || | || | ||| ||||| || || || ||||| |||| |||||||| Sbjct 847 TTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACTTCTGCGTGGATGT 788 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||| ||||| |||||||| || || ||||| Sbjct 787 TTTCAATGGCTATCTGGAACCCGTAGAAGCA 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915492417111632