Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6148 122 6e-23 seq6558 114 8e-21 seq1992 95.1 8e-15 seq229 86.0 4e-12 >seq6148 Length=2258 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||||| || ||||| ||||| | | |||| |||| Sbjct 1133 AGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCT 1192 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| |||||||||||||| || ||||| || || | || | || |||||||| Sbjct 1193 TCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCC 1252 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | | || | ||| | | || ||||| | ||| ||||| Sbjct 1253 TGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTT 1312 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || |||||||| || || ||||| Sbjct 1313 TTACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq6558 Length=25225 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||||||||| ||||| || || | || | || Sbjct 2738 AGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCC 2679 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || || || |||| ||||| ||||| | || | ||| |||||||| Sbjct 2678 TCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCC 2619 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | || | || || |||||| || | ||| || ||| Sbjct 2618 TGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTC 2559 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| | || || ||||| ||||||||| Sbjct 2558 TTCCCCGTCAACGTTTTCACAAATATCTGCATG 2526 >seq1992 Length=1353 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||| ||||| || || || ||||| || |||| | || Sbjct 870 AGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCT 929 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || || || |||| || || || || | || | || |||||||| Sbjct 930 TCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCT 989 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||||| || || || || |||| || || ||||||||| | |||||||| Sbjct 990 TGAATCTTTTGCTTCAC--ATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGG 1047 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || || || |||||| Sbjct 1048 TCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATG 1082 >seq229 Length=1895 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||||| ||| ||||| ||| | ||| | || ||||| ||||| ||||||||| Sbjct 872 TCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAG 813 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || || | ||| || | || || ||||| | || ||| | |||||| Sbjct 812 ATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTTC 753 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | | ||| || || | || || ||||| || || ||||||||||| Sbjct 752 ACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACG 693 Query 34967 AAGATCTGCATG 34978 || || || ||| Sbjct 692 AAAATTTGTATG 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325664665027472