Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1992 104 2e-17 seq3675 98.7 1e-15 seq229 86.0 6e-12 >seq1992 Length=1353 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 ||||| ||||| |||||||| || |||| |||||| | ||||| || ||| | Sbjct 891 TCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAA 950 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340 |||| || || ||||||||||| |||||||| ||||| ||| ||||| || | | Sbjct 951 ATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTC 1010 Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 137400 || | |||||| | ||| || || || | || | ||||| ||||| | || || ||| Sbjct 1011 TCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACG 1070 Query 137401 AATATTTGCATAGCTTATG 137419 || |||||||| | ||||| Sbjct 1071 AAAATTTGCAT-GGTTATG 1088 >seq3675 Length=4586 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 151286 ATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCA 151345 || ||||| | || || |||||| | ||||| || || || || | || |||| Sbjct 1556 ATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTG 1497 Query 151346 CACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCG 151405 ||||| || || |||| || ||| | || || ||||||||||||||||||| | Sbjct 1496 CACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGAG 1437 Query 151406 TCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTC 151449 |||||||| | |||||||||||| |||||||| ||||| |||| Sbjct 1436 TCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTC 1393 >seq229 Length=1895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 137220 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 137279 |||||| || | |||||| ||||||| | | | |||||| || || ||||| || | Sbjct 873 TTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAA 814 Query 137280 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 137339 |||||| || || | ||| | | | ||||||||||| ||| ||| | || | | Sbjct 813 GATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTT 754 Query 137340 TTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 137399 | | |||||| | || || || || | ||| | |||||| ||||||| || ||||| Sbjct 753 CACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTAC 694 Query 137400 GAATATTTGCAT 137411 ||| ||||| || Sbjct 693 GAAAATTTGTAT 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488500715001600