Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1992 141 2e-28 seq6558 122 2e-22 >seq1992 Length=1353 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || | |||||||||||||| ||||| || || | | ||| Sbjct 867 CGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCG 926 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||||| || ||||| || | | |||||||| ||||| || |||||||| Sbjct 927 TCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTG 986 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||||||| || ||||| |||||||| || || || || ||||| ||||| Sbjct 987 TCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATG 1046 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 ||||| || || | ||||| || || || ||||| |||| Sbjct 1047 GTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATGGTTAT 1087 >seq6558 Length=25225 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || | || ||||| || || || || || || ||| ||| Sbjct 2741 CGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 2682 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | ||||| || ||||| || | | |||||| || || || || |||||||| Sbjct 2681 TCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTG 2622 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||||||| || || || ||||| || || || || || ||||| || ||| Sbjct 2621 TCCTGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATC 2562 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || |||||||||||||| Sbjct 2561 GTCTTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981738035362832