Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3675 271 7e-68 seq1992 158 1e-33 seq6558 131 2e-25 seq229 109 5e-19 seq6148 105 6e-18 seq1888 105 6e-18 seq4042 100 3e-16 seq2749 96.9 3e-15 >seq3675 Length=4586 Score = 271 bits (300), Expect = 7e-68 Identities = 1072/1656 (65%), Gaps = 59/1656 (4%) Strand=Plus/Minus Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTC 148115 || || ||||| ||||| || |||||||| |||||||| || || |||| | Sbjct 2336 TGACTTTGGTCGATGAATGCACCACGGTCTGCGGCCATGGTAAGGATAGTCTTTTGGCTG 2277 Query 148116 ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGC 148175 || |||||| | ||||||||||| ||| || | ||||| ||| | | | || Sbjct 2276 ATTTCCCAGACGGTCTTGTACAGATCTTTGTACTGCTTGGGAAGGCCCTTAACGTTTTGA 2217 Query 148176 ACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCAT--TTCGTCCGTGTATAGGTTGAGCT 148233 || || || | | |||| ||||| ||||||| || | || | | ||| | | Sbjct 2216 ACAGATCCTCCATCGGCAATGATCTGGTTGCGCACGCTTGGG--GTCCAGATGTTCAACG 2159 Query 148234 CGATCAGGTCATCGATCAGATACTGATTCAC-CACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||||| |||| | || | || || || ||| | |||||| || || ||||| || Sbjct 2158 CGATCAAGTCACGCAACAAGTGCTTGTTGACGCACGT-AAACTCTCCTGCAAGCACACGT 2100 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 | |||| |||| |||| | ||||| || | |||||||| |||| ||| || | | Sbjct 2099 CTGTTGTACATGTTGGTCGTGTATGGTTCGAAGCATTCGTTGTTTCCCATAATTTGTGAG 2040 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 |||| ||||| ||||| ||| || |||| ||||||||| | ||| | || | Sbjct 2039 GTCGAGGCCGTCGGCATTGGCGCGACGAGCAACGAGTTGCGTACGCCGTGCTTGGCGACA 1980 Query 148413 TTG-CGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 ||| ||| || ||||||||||||| | || || || |||||||||||||| Sbjct 1979 TTGGCGCGA-AGTTCCGCCCAGTCCCATCGGTCCGTTGGGGTAACGTTCCACATGTCCGG 1921 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT-GCG--C 148528 || | ||||| | | || | ||| ||| | ||| ||||| ||| | Sbjct 1920 TTGGAAGATGCCTTTGGAGACTGGACAGCCTGGGTAGGTCTCGTAGTGTCCGAAGCGTTC 1861 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 ||| || ||||| ||| | |||| || |||| || || ||| || | | | Sbjct 1860 GGCCTCC---TCGCAAGACGCGGTCATCGCGGCGAAGTACATGGTTTCGAATATCTCCTT 1804 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 ||| | | ||| ||||||||| | || | |||| | | ||||||||||| Sbjct 1803 GTTCAATTGTCGGGCCTCTTCGCTTTCGAATGGAAAGCGCATCAAAATGAACGCGTCGGC 1744 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708 ||| || || ||||||| ||||| || ||||| || |||||| ||| || ||| Sbjct 1743 AAGCCCTTGGACGCCCAGCCCAATTGGGCGGTGGCGCATATTGGAGTAGCGAGCCTCCTC 1684 Query 148709 GAGCGGATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCG--CACC-----ACCACC 148760 | || |||| |||| |||||||| || |||| | || ||| | || | Sbjct 1683 CACTGGGTAGTAGTTGACGTCGATGACACGGTTCAAGTTGACGGTCACGGTTTTAACAAC 1624 Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCA---------TCTACGATGCAT 148811 | | || ||| | || | | | |||||| || |||| | | Sbjct 1623 ATCG-AACAGTGCCTTGTGGTTGTACACTGG-CTTGTCGCCGCTGGTGTCCACGAA-CTT 1567 Query 148812 CGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871 || || | ||| || || | ||||| ||||| |||| |||||||| |||||| Sbjct 1566 TGG--CAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGG 1509 Query 148872 ACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931 | |||||| | ||||| || || |||| || |||| ||| | || ||||| ||| Sbjct 1508 ATGATCTCCGTGCACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTG 1449 Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 | |||||| | ||||||||| |||||||||||| || ||||| || || |||| | Sbjct 1448 CGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTCAAGG 1389 Query 148992 AT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA---CCCTCCTGC 149045 || ||||| || ||||| ||||| | || | || | | | ||||| | Sbjct 1388 ATTTTGAACCA---CAATTCCTGGGCGCGGA--TGGT-CTTGAACCCTTTGCCCTCTGCC 1335 Query 149046 TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGAC--CGGGGC 149103 ||||| | |||| |||||| ||||||| || |||| || |||| | Sbjct 1334 TCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCC 1275 Query 149104 ACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGAT 149163 || | || || || | | | |||| ||||| | | ||||||||||| || || | Sbjct 1274 ACGT-TG-GGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGT 1217 Query 149164 CGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGC 149223 | || | ||| | |||||| | |||||||| || | || ||| | || ||| Sbjct 1216 CTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTT 1157 Query 149224 GGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGC 149282 || | | | || | || | |||||||||||||||||||| ||||| |||| | Sbjct 1156 TCTTCAAATCCAAGAACTCAAAA-ACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAAC 1098 Query 149283 GCGCCCTTGCGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGA 149339 | ||||||||||||||| ||| |||||||||| || | ||| ||| || || || Sbjct 1097 GAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGC 1038 Query 149340 ACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT 149399 | ||| || ||||| || | ||||| || | |||| ||||| | | Sbjct 1037 AGCATGGGGATGATGCCGTTGCTGGAACCGTTGGTGCCCCGAATGTAGCTGCCTTGGGAG 978 Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGT-C 149458 || | ||| | | | |||||||| ||| ||||||| |||| |||||| | Sbjct 977 CGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGCAGGAC 918 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 | || || |||||| || |||||||||||| |||||||||||||| |||||||| Sbjct 917 TTCAAG-GTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGCACGA 859 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 | | ||||| | || ||||| ||| | ||| || ||||||| || || || Sbjct 858 GGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGAAGTA 799 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 | | |||||||| | ||| | ||||| | | || || ||||| | ||||| || Sbjct 798 CATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGGATACC 739 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 |||| |||||||| ||||| |||||||| ||||| Sbjct 738 GATGGAAACGCGCATGAGCATGTGCTGCGGGCGCTC 703 >seq1992 Length=1353 Score = 158 bits (174), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||| ||||||||||||||||||||| || |||| ||| || | ||| || ||| Sbjct 885 GTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCC 944 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | |||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 945 GCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTC 1004 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| |||||| | |||||| || || | ||| | ||| || ||||| || || Sbjct 1005 ACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTC 1064 Query 133644 TTTACGAAAATCTGCATGGCTTAT 133667 || |||||||| ||||||| |||| Sbjct 1065 TTGACGAAAATTTGCATGG-TTAT 1087 >seq6558 Length=25225 Score = 131 bits (144), Expect = 2e-25 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||||| ||| ||||| || ||||| ||| | ||| || || ||||| | ||| || Sbjct 2724 GGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG--TCCTCCAACTGTTTC 2667 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 ||||| |||| | ||| || |||||||| ||||| ||||||||||| ||||||||| Sbjct 2666 CCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGC 2607 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| | |||||| ||||| | ||| | || || || |||| Sbjct 2606 TTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAAC 2547 Query 133641 GTTTTTACGAAAATCTGCATGGCTT 133665 ||||| || || |||||||||| || Sbjct 2546 GTTTTCACAAATATCTGCATGGTTT 2522 >seq229 Length=1895 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||| |||||||| | ||||| |||| || | | ||| || |||||||| || Sbjct 878 GTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCG 819 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||||||| | |||| | || | ||||| ||||| |||||| ||||| Sbjct 818 GCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTG 759 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | | | | ||||||| | ||||||||||| | || | || || |||||||| || Sbjct 758 ACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTC 699 Query 133644 TTTACGAAAATCTGCATG 133661 ||||||||||| || ||| Sbjct 698 TTTACGAAAATTTGTATG 681 >seq6148 Length=2258 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||| || || || || ||||| || | || ||| | | | || || | Sbjct 1139 AAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCA-TCTTCCAA 1197 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | || || || || || || || ||||| ||||||||||| ||| Sbjct 1198 TTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGAT 1257 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | || | ||||| | || ||||| |||| ||| | |||||| || Sbjct 1258 CTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTACC 1317 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||||||||| ||||| Sbjct 1318 CGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq1888 Length=501 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||| || || || ||||| ||||||||||| |||||||||||||| | | Sbjct 5 ATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTC 64 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || || | |||||||| |||| |||| |||||| || |||| ||||||||| Sbjct 65 TCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTTACG 124 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 125 AAAATTTGCAT 135 >seq4042 Length=4160 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||||||||| || ||||| ||||||| || ||| ||| || |||||||| || Sbjct 2593 GTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACC-GTCTTCCAGCTGCTTCCC 2535 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || || || || |||||||||||||| |||| ||||||| Sbjct 2534 GGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTT 2475 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGT 133621 | | ||| | ||||||| | || || ||||| | ||| Sbjct 2474 CACGTTCTCGATCGTGTCGCTCGGTTCGACGTCAAGGGT 2436 >seq2749 Length=6745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || || || || ||||||||| || || | | | || || |||||||||| Sbjct 5238 GGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCA-TCTTCCAGCTGCTTGC 5180 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||| ||||| || ||||| ||||| ||||| ||| ||| || Sbjct 5179 CGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCCTGGATTTTTCCCT 5120 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | | | ||||||| | |||||||||| | || | || || ||||||| | Sbjct 5119 TGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCGTCTTACCGGTCAATG 5060 Query 133642 TTTTTACGAA 133651 | || ||||| Sbjct 5059 TCTTGACGAA 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483377968917120