Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6558 107 1e-18 seq6148 98.7 7e-16 seq1992 98.7 7e-16 seq2749 82.4 5e-11 >seq6558 Length=25225 Score = 107 bits (118), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||||||| || || |||| ||||| ||| Sbjct 2729 TGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGT 2670 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||||| || || || || | || | ||||| ||||| ||| || Sbjct 2669 TTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTT 2610 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || || | || | |||||| | || ||||| | || ||||| || || || Sbjct 2609 TGCTT-GACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGT 2551 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTT 33753 |||||||| ||||| |||||||| ||| Sbjct 2550 CAACGTTTTCACAAATATCTGCATGGTT 2523 >seq6148 Length=2258 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| || ||||| |||||||| || Sbjct 1118 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTC 1177 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || ||||||||||||||||| || || | ||| || ||||| | || Sbjct 1178 AAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGG 1237 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || || || || | || | |||||| |||| |||||| Sbjct 1238 ATACCTTCCTTGTCCTGGATCTTTTGCTT-GACGTTTTCGATGGTGTCACTTGGTTCCAC 1296 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | || ||||| || || ||||| Sbjct 1297 ATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq1992 Length=1353 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || | ||| |||||| ||||| |||||||| || || ||||| |||| || Sbjct 872 CACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTC 931 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| ||||| || ||||||||||| ||||| ||||| | || | ||||| ||||| Sbjct 932 CAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTG 991 Query 33660 AATTTTCTGTTTCA 33673 ||| || || |||| Sbjct 992 AATCTTTTGCTTCA 1005 >seq2749 Length=6745 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||||||||| | || || | || |||| || || ||||| ||| Sbjct 5231 TCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAA 5172 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT-CGGCAATTTTCTGTTTCAACAT 33677 |||| ||||| || || |||| | ||||||||||| | | | ||||| || || | Sbjct 5171 ATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCCTGGATTTTTCCCTT--GACGT 5114 Query 33678 AGTCACG---GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 ||| | |||||||| | ||||||| | || ||||| ||||| || || || || Sbjct 5113 --TCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCGTCTTACCGGTCAATGTCTT 5056 Query 33735 TACAAA 33740 || || Sbjct 5055 GACGAA 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328675604904960