Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6148 96.9 8e-15 seq2749 96.9 8e-15 seq4042 86.0 1e-11 seq6558 84.2 5e-11 >seq6148 Length=2258 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || || | || |||||| |||||| ||||| Sbjct 1329 AAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCAAGTGACACCATCGAAAAC 1270 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || ||||| || || || ||| | ||||||||| Sbjct 1269 GTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCAACAACGTCTTATCTTC 1210 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || ||||||||||| | || ||| || |||||| |||| || || | Sbjct 1209 GCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTACAACATCCAAAAGGAAGCC 1150 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | ||| | | ||||| Sbjct 1149 ACCCTTCACTTGGTTCTTCGTCTTCG 1124 >seq2749 Length=6745 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA--GTAAAGC 206251 || || || ||||| |||||| | ||||| | ||||| || || | || ||| Sbjct 5065 ACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGATC--ATGAACGTCAAGG 5122 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||| || || || |||||||| || ||| ||| || |||| || |||||||| | Sbjct 5123 GAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGACTGATTTTCGCCGGCA 5182 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 ||||| |||||||||| | |||||| ||||||||||| |||| || || || || | | Sbjct 5183 AGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAAAAGGATTCCACCTTGC 5242 Query 206372 ACCTTGTTTTGAGACTTCG 206390 |||| || ||| | || || Sbjct 5243 ACCTAGTCTTGCGCCTCCG 5261 >seq4042 Length=4160 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||| ||| || || || ||||| ||| ||||| || | |||||||| Sbjct 2472 GTGAAGCAAATGATCCAGGACAAGGAAGGCATTCCCCCGGATCAACAGCGTCTTATCTTT 2531 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| |||||| ||||||| || | || |||| ||| |||||| ||||||||||| Sbjct 2532 GCCGGGAAGCAGCTGGAAGACGGTCGAACCTTGGGCGACTACAACATCCAGAAAGAG 2588 >seq6558 Length=25225 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| |||||| | || || || ||||| || ||||| || || || ||| Sbjct 2530 CAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCTCGGAC 2589 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || |||||||||||||| || || ||||| || || ||| ||| Sbjct 2590 ACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACCAACAA 2649 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || || |||||||| || || | || | |||| |||||| | Sbjct 2650 CGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTCTCCGACTACAACATT 2709 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| | || || ||||| || Sbjct 2710 CAGAAGGAGGCCACCCTCCACCTCGT 2735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181713472944048