Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3675 206 3e-48 seq6148 113 4e-20 seq229 98.7 9e-16 seq4042 89.7 5e-13 seq1888 87.8 2e-12 >seq3675 Length=4586 Score = 206 bits (228), Expect = 3e-48 Identities = 635/969 (66%), Gaps = 25/969 (3%) Strand=Plus/Minus Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521 ||| ||||||| ||||| ||||| |||| || | | | ||||||| | ||| || | Sbjct 1557 GATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGT 1498 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 ||||| ||| || |||| || |||||| |||||||| |||||||| || ||||| | Sbjct 1497 GCACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGA 1438 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCT 147638 ||| ||| |||||||||||||| ||||| || ||||| |||||| ||| |||| Sbjct 1437 GTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTTGAACCA 1378 Query 147639 ATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCG--GCCCTCGTTTTCGTACCGCTCG 147696 || ||||| || || | || || | |||||| |||||| || Sbjct 1377 ---CAATTCCTGGGCGCGGATGGTCTT--GAACCCTTTGCCCTCTGCCTCGTACTTGGCG 1323 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGC--CGGGACACTGATGCGGAC 147754 ||||| || ||||| ||||| || ||| ||| |||| ||| | || |||| Sbjct 1322 TACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGGCCAC-GTTG-GGAC 1265 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || | |||| |||| | | ||||| ||| || || || || | ||||| Sbjct 1264 AGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCACA 1205 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT-A 147873 |||||| | || ||||| || | | |||| | || ||| ||||||| | Sbjct 1204 TCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATCCA 1145 Query 147874 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC 147933 || || | | | | ||| |||||||| || |||| ||| | ||| | || || || ||| Sbjct 1144 AGAACTCAAAA-ACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCGC 1086 Query 147934 TT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCC 147990 || |||||| |||||||| | || | ||| ||| || ||||||| |||||| Sbjct 1085 TTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGATG 1026 Query 147991 AGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGC 148050 | |||| | | ||||||||| || | |||||| ||| || | |||| Sbjct 1025 ATGCCGTTGCTGGAACCGTTGGTGCCCCGAATGTAGCTGCCTTGGGAGCGAATGCCGTGG 966 Query 148051 ACGTTAACGCCAATGCCGCCGCCGTACTT--TGATATGGCAG-CGCAATCGCCCAATGTC 148107 | | | || ||||| ||| ||||||| |||| |||| |||| ||| || Sbjct 965 ATGGATAGACCGATGCCCCCGGCGTACTTGCTGAT---GCAGGCGCAGGACTTCAAGGTG 909 Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 |||||| || ||||||||||||| || | | ||||| || ||||| | ||| Sbjct 908 TCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGCACGAGGCGAGCTGC 849 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | || || || ||| ||||| || | ||||| || || | | | ||| Sbjct 848 GGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGAAGTACATGTTGCTC 789 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 |||| | || ||||| || || |||||||| | ||| || || | | ||| Sbjct 788 ATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGGATACCGATGGAAACG 729 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||||||||||||||| || || ||| | | || ||||||||| | ||| || | Sbjct 728 CGCATGAGCATGTGCTGCGGGCGCTCGACGATCTGGCCGTTGATCTTCAAAAGGTAGGCC 669 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407 | || | ||||||| | || ||||| | ||| | || || ||| ||| |||| | Sbjct 668 CTCTCCAAGGTTTTGAACCCGAAGTAGTCGTACCCGAAGTCGCGCTTGTAGTCGATTGTG 609 Query 148408 GCATCTAGT 148416 || || ||| Sbjct 608 GCCTCAAGT 600 >seq6148 Length=2258 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | | || ||||| ||||||||||| |||| ||| || |||||| Sbjct 1135 AACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTC 1194 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| |||| |||| ||||| |||||||| || || || ||||| || || Sbjct 1195 CAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTG 1254 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||||| || | | ||| | || || | || ||||| |||| || | ||||| Sbjct 1255 GATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTT 1314 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || ||||| |||| |||||| ||||| Sbjct 1315 ACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq229 Length=1895 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| |||| |||||||||||||| | | ||| ||||| ||||| ||||||| || Sbjct 872 TCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAG 813 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || || ||||||| || | | | |||||||| || ||| ||| | || | | Sbjct 812 ATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTTC 753 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 | | || ||| |||||||||| || | || | ||| ||||| ||||| || |||| | Sbjct 752 ACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACG 693 Query 132113 AAAATCTGCATG 132124 ||||| || ||| Sbjct 692 AAAATTTGTATG 681 >seq4042 Length=4160 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 |||||| || ||||||||||||| || ||| || ||||| ||||| || |||| | | Sbjct 2588 CTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAA 2529 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| |||||||||||||| || || |||||||| || || || |||| |||| | Sbjct 2528 GATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTTCACGTT 2469 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTC 132078 || | || ||| |||| || || || Sbjct 2468 CTCGATCGTGTCGCTCGGTTCGACGTC 2442 >seq1888 Length=501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050 |||| |||||||||||||| || || || ||||| || || || ||||| || | | Sbjct 3 AGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGT 62 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 || | ||||| | |||||||| |||| ||| | |||||||| |||| ||||||| Sbjct 63 TCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTTA 122 Query 132111 TGAAAATCTGCAT 132123 |||||| ||||| Sbjct 123 CGAAAATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476568972247680