Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3919 167 3e-35 seq3675 132 7e-25 >seq3919 Length=4506 Score = 167 bits (184), Expect = 3e-35 Identities = 399/586 (68%), Gaps = 18/586 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || |||||||| || || || ||||||| |||| || | || ||| |||||||| Sbjct 502 GAAAACCCGAAACGATTCGTTTTGTTCCCGATCCAGCACAACGATATTTGGCAAATGTAC 561 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCC-GACACGG 1455849 |||||| | || ||||| || ||||| || || ||| | ||| | ||| | |||| Sbjct 562 AAAAAAG-CTGAAGCCTCGTTCTGGACTGCGGAAGAGCTGGACTT-GGCACAAGACAGTA 619 Query 1455850 TCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||| ||| ||| |||| || ||||||| ||||||| ||||||| Sbjct 620 AAGACTGGGATAAAATGACGGACAACGAACGGTTCTTCATCAGCAACGTCCTGGCCTTTT 679 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||| ||| || ||||| || |||||||||| ||| ||| || ||| Sbjct 680 T-CGCAGCCTCTGACGGCATTGTAAACGAGAACCTGTTGATGAACTTCTCGAACGAAGTC 738 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 ||| |||| |||||| | | || |||||||||||||| ||||| |||||||||||| | Sbjct 739 CAACTGCCGGAGGCAAGGTGCTTCTACGGGTTCCAGATAGCCATTGAAAACATCCACGCA 798 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 ||| ||||| || || || ||||| ||| | || | || ||||| | Sbjct 799 GAAGTATACTCTCTTCTTATTGACACGTACATTAAAAATGGAAAAGAAAAGGATAGGTTG 858 Query 1456090 TTTCGCGCCATCGA-CACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGG-GCGATGAAGT 1456147 | |||||||| || || | | ||| | |||||||||| ||| || | | | Sbjct 859 CTGAATGCCATCGATAACATTGACAT-GGTCCGCCAAAAGGCCGATTGGTGCCTTCGA-T 916 Query 1456148 GGATCAACAAGG--AGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGCGT-C 1456204 ||| |||| | | || ||| |||||||| || | || | || ||||||| | Sbjct 917 GGACCAACGCCGAAAATGCGTCG----TTTGCCGAAAGGGTTGTAGCTTTCGCCGCGTGC 972 Query 1456205 GAGGGCATCTT-TTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 ||||||||||| ||| |||| |||| || ||| | || ||| | |||||||| || | Sbjct 973 GAGGGCATCTTCTTTTCCGGGTCGTTT-TGTGCCGTGTTCTGGTTAAAGAAGCGGGGTTT 1031 Query 1456264 CATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| ||| ||||| |||||| | ||||| |||||||| Sbjct 1032 GATGCCCGG-CTTGTGCTTCTCCAACGAGCTCATCAGCCGCGACGA 1076 >seq3675 Length=4586 Score = 132 bits (146), Expect = 7e-25 Identities = 197/275 (72%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 259910 TTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTC 259968 ||||| ||| || ||||| || ||||| || ||||| || || ||||||||| | || Sbjct 802 TTCAC-TCACGCCACGCCGACCCTCTTCAACGCCGGGACCCCACGCCCGCAGCTCGCCTC 860 Query 259969 GTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCA 260028 |||||| || || |||||||| ||| ||||| || ||||| ||||| | ||| Sbjct 861 GTGCTTCTTGCTGACCATGAAGGACGACAGCATCGAAGGGATCTACGACACCTTGAAGTC 920 Query 260029 GTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGC 260088 ||||| |||| |||| ||||| ||||||||| | || ||| | ||| | Sbjct 921 CTGCGCCTGCATCAGCAAGTACGCCGGGGGCATCGGTCTATCCATCCACGGCATTCGCTC 980 Query 260089 CGCGGGCGCCTACGTGGCGGGCACCAACGG--CCAGTCCAACGGCCTTGTGCCCATGCTT 260146 | ||| |||| | |||||||||||| |||| ||||||| | | |||||||| Sbjct 981 CCAAGGCAGCTACATTCGGGGCACCAACGGTTCCAG--CAACGGCATCATCCCCATGCTG 1038 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||| || |||||||| || || ||||||||||| Sbjct 1039 CGCGTCTTCAACGACACCGCACGGTACGTCGACCA 1073 Score = 91.5 bits (100), Expect = 2e-12 Identities = 137/187 (73%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACA-GCATGGCCTGCGCAACTCGT 262933 ||| |||||||||| | ||| || || || || || ||| ||| | |||||||||| Sbjct 1950 CCGATGGGACTGGGCGGAACTTCGCGCCAATGT-CGCCAAGCACGGCGTACGCAACTCGT 2008 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||||| |||| ||||| |||||| |||| || || || |||| |||| ||| | Sbjct 2009 TGCTCGTCGCGCCAATGCCGACGGCCTCGACCTCACAAATTATGGGAAACAACGAATGCT 2068 Query 262994 TCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTG 263052 |||| ||| ||||| |||||| |||| | || ||||| | || || |||| |||| Sbjct 2069 TCGA-ACCATACACGACCAACATGTACAACAGACGTGTGCTTGCAGGAGAGTTTA-CGTG 2126 Query 263053 -GTCAAC 263058 |||||| Sbjct 2127 CGTCAAC 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177127549372256