Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6558 125 6e-24 seq4042 122 8e-23 seq2749 102 7e-17 seq1992 100 3e-16 seq229 96.9 3e-15 seq6148 91.5 1e-13 >seq6558 Length=25225 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||||| |||| |||| ||| || |||||||| Sbjct 2718 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAA 2659 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| || ||||| | || | | ||||||||| ||||||||||| | | Sbjct 2658 AATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTT 2599 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || || |||| || ||||| || |||||||| |||||||| Sbjct 2598 CTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCAC 2539 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 2538 AAATATCTGCAT 2527 >seq4042 Length=4160 Score = 122 bits (134), Expect = 8e-23 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | || | || ||||| ||| || || |||||||| ||| Sbjct 2625 TTCCACCACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGC 2566 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||||||||| |||| ||||||||||| || ||||| || | ||||| || |||| | Sbjct 2565 CCAAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGG 2506 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || ||||||||| |||| ||||||||| | | | ||||||||||| ||| | Sbjct 2505 GAATGCCTTCCTTGTCCTGGATCATTTGCTTCACGTTCTCGATCGTGTCGCTCGGTTCGA 2446 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTG 35733 | || | || ||| | || ||||| |||| | ||||| || || Sbjct 2445 CGTCAAGGGTAATCCTCTT-CCCGT--AAGTCTCTACAAACATTTG 2403 >seq2749 Length=6745 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | ||| || | || || || |||||||| ||||||||||||| Sbjct 5268 TCCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGA 5209 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || ||||||||||| || || || |||| ||||| ||||| | || Sbjct 5208 CAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGG 5149 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||||| ||| ||| ||| | | | ||||||||| | ||||| Sbjct 5148 GATACCTTCTTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCAC 5089 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATA 35729 | || || ||||| ||||| ||||| || || || |||| Sbjct 5088 GTACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAATA 5048 >seq1992 Length=1353 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || ||||| ||| || || || |||||||| | || || || |||| || Sbjct 872 CACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTC 931 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || |||||||| ||||||||||| || || | ||| | || |||||||| Sbjct 932 CAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTG 991 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||||||||||| | | | | |||||| | || || |||| || || || || Sbjct 992 AATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTT 1051 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || || || || ||||| Sbjct 1052 CCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq229 Length=1895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||| |||||| ||| || | ||||| |||| |||||||||||||| || || Sbjct 872 TCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAG 813 Query 35606 ATCAACCGCTGCTGGTC-CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||| | ||| | || || || |||||| |||||| |||| | | Sbjct 812 ATCAGCCGCTGTTTGTCGTGTTGGGTACCT-TCTTTGTCCTGAATCTTTCGCTTGACGTT 754 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||||| ||||| |||| || ||||| ||||| |||| || || || Sbjct 753 CACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTAC 694 Query 35725 AAATATCTGCAT 35736 || || || || Sbjct 693 GAAAATTTGTAT 682 >seq6148 Length=2258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||||| ||||||||| | | | ||||| || | || |||||||| ||||||| Sbjct 1110 CTTTACCTCCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGT 1169 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | || |||||| || | || |||| || || || || || || | || || || | Sbjct 1170 AGTCACTCAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGAT 1229 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | || | | ||||||||| |||||||||||| | || | | ||||| || | Sbjct 1230 CAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTG 1289 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| || | || || ||||||||||| | ||| || || || || ||||| Sbjct 1290 GTTCCACATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450753659687040