Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3919 161 8e-35 >seq3919 Length=4506 Score = 161 bits (178), Expect = 8e-35 Identities = 587/903 (65%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 || || ||||| ||| | || || |||| || || || | | || || |||||| Sbjct 496 CTGACGGAAAACCCGAAACGATTCGTTTTGTTCCCGATCCAGCACAACGATATTTGGCAA 555 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 |||||||||||||| | || || || ||||| || ||||| | || ||| | ||||| Sbjct 556 ATGTACAAAAAAGCTGAAGCCTCGTTCTGGACTGCGGAAGAGCTGGACTTGGCACAAGAC 615 Query 43799 TTAGCACATTGGATTGCATTAAAACCACAAGAAA--AACATTTTAT-ATCTTTG--GTTT 43853 || | | || || ||||| || || ||| || | ||| || Sbjct 616 --AGTAAA---GACTGGGATAAAATGACGGACAACGAACGGTTCTTCATCAGCAACGTCC 670 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| ||||| || || ||||| || || || || || || | | || || Sbjct 671 TGGCCTTTTTCGCAGCCTCTGACGGCATTGTAAACGAGAACCTGTTGATGAACTTCTCGA 730 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | ||||| ||| | || || ||| | || || || ||||| || || ||||| ||||| | Sbjct 731 ACGAAGTCCAACTGCCGGAGGCAAGGTGCTTCTACGGGTTCCAGATAGCCATTGAAAACA 790 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || | ||| | ||| |||||| || || |||||||| ||| |||| | || ||| Sbjct 791 TCCACGCAGAAGTATACTCTCTTCTTATTGACACGTACATTAAAAATGGAAAAGAAAAGG 850 Query 44034 ATCGATTGTTTAATGCGATAGA-AACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGC 44091 || | ||| | ||||| || || |||| | || || | || || || || ||| Sbjct 851 ATAGGTTGCTGAATGCCATCGATAACATTGACATGG--TCCGCCAAAAGGCCGATTGGTG 908 Query 44092 CCTTAAATGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 |||| ||||| || | ||||| || |||| ||| | |||| || || || | Sbjct 909 CCTTCGATGGACCAACGCCGAAAATGCGTCGTTTGCCGAAAGGGTTGTAGCTTTCGCCGC 968 Query 44149 TGTG-GAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207 ||| || ||||| |||||||| || |||||| ||| | || ||||||||||| || | Sbjct 969 -GTGCGAGGGCATCTTCTTTTCCGGGTCGTTTTGTGCCGTGTTCTGGTTAAAGAAGCGGG 1027 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267 |||||||||| || ||| || || || ||| | || || || || || ||||| || | Sbjct 1028 GTTTGATGCCCGGCTTGTGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCTTGCACT 1087 Query 44268 GCGATTTTGCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGAC 44325 | ||||| || |||||| ||| ||| || | | | | || ||| || | Sbjct 1088 GTGATTTCGCGTGCTTGCTGTACAAGGACCACTTGATAAATAAACTCCCTCA-ACAACGC 1146 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 | | || ||||| | | | || || | || ||| ||| || || | | |||||| Sbjct 1147 ATTCAC-GATATCATCGGGAACGCTGTGGACATCGAAAAAGTTTTCGTGTCCAAAGCATT 1205 Query 44386 ACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGC 44445 || || | || ||||| |||||| |||||| | |||| || || ||| || Sbjct 1206 GCCCGTGGAATTGATAGGGATGAATTCCACCTTGATGTGCGAATACATCGAGTACTGCGC 1265 Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505 ||| || || | ||| |||| || || || | | | || |||||||| Sbjct 1266 AGACCGATTGTTGGTGGCCTTGGGGGTTGAAAAGATGTACAACGCAACCAATCCGTTTGA 1325 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 || ||||||| || ||| || |||| || || || |||||||| || || || || || Sbjct 1326 TTGGATGGAAATGATATCGCTGCAAGGAAAGACCAATTTTTTTGAGAAGCGGGTAGGTGA 1385 Query 44566 ATA 44568 || Sbjct 1386 GTA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397421665763440